hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj17080/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4237  ( 519 res)   mfj17080

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    216.3    2.6e-60  11
KRAB     krueppel associated box                        117.7    1.3e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1       8    68 ..     1    62 []   117.7  1.3e-30
ZnF_C2H2   1/11    188   210 ..     1    23 []    29.5  0.00046
ZnF_C2H2   2/11    243   265 ..     1    23 []    26.5   0.0038
ZnF_C2H2   3/11    271   293 ..     1    23 []    20.7      0.2
ZnF_C2H2   4/11    299   321 ..     1    23 []    28.1   0.0012
ZnF_C2H2   5/11    327   349 ..     1    23 []    25.6   0.0069
ZnF_C2H2   6/11    355   377 ..     1    23 []    20.1     0.32
ZnF_C2H2   7/11    383   405 ..     1    23 []    23.1    0.039
ZnF_C2H2   8/11    411   433 ..     1    23 []    30.2  0.00028
ZnF_C2H2   9/11    439   461 ..     1    23 []    26.8    0.003
ZnF_C2H2  10/11    467   489 ..     1    23 []    22.1     0.08
ZnF_C2H2  11/11    497   519 .]     1    23 []    28.7  0.00078

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 8 to 68: score 117.7, E = 1.3e-30
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      V+FeDV VdF+qEEW  L p QrnLYRdVMlENY nL+ +G +q+ k
   mKIAA4237     8    VSFEDVIVDFTQEEWSSLNPDQRNLYRDVMLENYQNLATVG-YQLIK 53   

                   pdliskLEqgeEpwi<-*
                   p lis+LEq+e+      
   mKIAA4237    54 PSLISWLEQEEFSKG    68   

ZnF_C2H2: domain 1 of 11, from 188 to 210: score 29.5, E = 0.00046
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  Cgksf s+++L+ H+r+H   
   mKIAA4237   188    FECSD-CGKSFMSQsHLQTHQRTH    210  

ZnF_C2H2: domain 2 of 11, from 243 to 265: score 26.5, E = 0.0038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk ++ +  L+ Hmr+H   
   mKIAA4237   243    HRCKE-CGKGYRYPaYLNIHMRTH    265  

ZnF_C2H2: domain 3 of 11, from 271 to 293: score 20.7, E = 0.2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++++ H r+H   
   mKIAA4237   271    YECKE-CGKAFNYSnSFQIHGRTH    293  

ZnF_C2H2: domain 4 of 11, from 299 to 321: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++++ L  H+r+H   
   mKIAA4237   299    YVCSQ-CGKAFTQHsGLSIHVRSH    321  

ZnF_C2H2: domain 5 of 11, from 327 to 349: score 25.6, E = 0.0069
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f + + L++H+r+H   
   mKIAA4237   327    YGCKE-CGKAFLTSsRLIQHIRTH    349  

ZnF_C2H2: domain 6 of 11, from 355 to 377: score 20.1, E = 0.32
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgk f   ++L+ H++ H   
   mKIAA4237   355    FVCVK-CGKAFAISsNLNGHLKLH    377  

ZnF_C2H2: domain 7 of 11, from 383 to 405: score 23.1, E = 0.039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C+i Cgk f   + L++Hmr+H   
   mKIAA4237   383    CECKI-CGKAFGYLsCLNNHMRTH    405  

ZnF_C2H2: domain 8 of 11, from 411 to 433: score 30.2, E = 0.00028
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++Lk Hmr+H   
   mKIAA4237   411    YTCKE-CGKAFNYStHLKIHMRIH    433  

ZnF_C2H2: domain 9 of 11, from 439 to 461: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++++ H r+H   
   mKIAA4237   439    YECKQ-CGKAFSHStSFQIHERTH    461  

	[output cut off at A = 10 top alignments]
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