hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj05191/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4236 ( 919 res) mfj05191 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 454.5 5.3e-132 25 KRAB krueppel associated box 131.7 7.7e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 36 96 .. 1 62 [] 131.7 7.7e-35 ZnF_C2H2 1/25 112 132 .. 1 23 [] 10.0 23 ZnF_C2H2 2/25 196 218 .. 1 23 [] 24.8 0.012 ZnF_C2H2 3/25 224 246 .. 1 23 [] 22.5 0.06 ZnF_C2H2 4/25 308 329 .. 1 23 [] 4.1 1.1e+02 ZnF_C2H2 5/25 335 357 .. 1 23 [] 26.2 0.0044 ZnF_C2H2 6/25 363 385 .. 1 23 [] 24.1 0.019 ZnF_C2H2 7/25 391 413 .. 1 23 [] 29.2 0.00057 ZnF_C2H2 8/25 419 441 .. 1 23 [] 24.7 0.013 ZnF_C2H2 9/25 447 469 .. 1 23 [] 28.8 0.00076 ZnF_C2H2 10/25 475 497 .. 1 23 [] 25.3 0.0085 ZnF_C2H2 11/25 503 525 .. 1 23 [] 25.0 0.011 ZnF_C2H2 12/25 531 553 .. 1 23 [] 29.8 0.00037 ZnF_C2H2 13/25 559 581 .. 1 23 [] 23.7 0.026 ZnF_C2H2 14/25 587 609 .. 1 23 [] 27.1 0.0025 ZnF_C2H2 15/25 615 637 .. 1 23 [] 25.3 0.0086 ZnF_C2H2 16/25 643 665 .. 1 23 [] 25.7 0.0065 ZnF_C2H2 17/25 671 693 .. 1 23 [] 29.8 0.00037 ZnF_C2H2 18/25 699 721 .. 1 23 [] 25.6 0.0068 ZnF_C2H2 19/25 727 749 .. 1 23 [] 29.4 0.00048 ZnF_C2H2 20/25 755 777 .. 1 23 [] 25.1 0.01 ZnF_C2H2 21/25 783 805 .. 1 23 [] 27.1 0.0025 ZnF_C2H2 22/25 811 833 .. 1 23 [] 25.3 0.0086 ZnF_C2H2 23/25 839 861 .. 1 23 [] 26.6 0.0034 ZnF_C2H2 24/25 867 889 .. 1 23 [] 29.4 0.00048 ZnF_C2H2 25/25 895 917 .. 1 23 [] 27.6 0.0018 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 36 to 96: score 131.7, E = 7.7e-35 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk ++F+DVAVdFs EEWe+L+paQ+nLYRdVMlENYs+Lv+LG +++sk mKIAA4236 36 LSFRDVAVDFSAEEWECLEPAQWNLYRDVMLENYSHLVFLG-LAFSK 81 pdliskLEqgeEpwi<-* p l++ LEq++Ep + mKIAA4236 82 PYLVTFLEQRQEPLN 96 ZnF_C2H2: domain 1 of 25, from 112 to 132: score 10.0, E = 23 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk + + + L +H+r mKIAA4236 112 YKCKE-CGKACDWNsLLLEHQR-- 132 ZnF_C2H2: domain 2 of 25, from 196 to 218: score 24.8, E = 0.012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fss++ L +H H mKIAA4236 196 YKCEE-CGKAFSSHsCLAQHEVEH 218 ZnF_C2H2: domain 3 of 25, from 224 to 246: score 22.5, E = 0.06 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f +++L++H+++H mKIAA4236 224 YNCEE-CGKLFYCPsHLTEHQKIH 246 ZnF_C2H2: domain 4 of 25, from 308 to 329: score 4.1, E = 1.1e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cg f++ ++ + m++H mKIAA4236 308 FKCEE-CGNAFCTLhSVSK-MKIH 329 ZnF_C2H2: domain 5 of 25, from 335 to 357: score 26.2, E = 0.0044 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f ++ +L++H H mKIAA4236 335 YKCEE-CGKAFATHlSLIQHKIGH 357 ZnF_C2H2: domain 6 of 25, from 363 to 385: score 24.1, E = 0.019 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f ++Lk+H+ +H mKIAA4236 363 YQCEE-CGKMFYCSsNLKQHQITH 385 ZnF_C2H2: domain 7 of 25, from 391 to 413: score 29.2, E = 0.00057 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ +L +H+r+H mKIAA4236 391 YKCEV-CGKVFRTCwQLSKHLRIH 413 ZnF_C2H2: domain 8 of 25, from 419 to 441: score 24.7, E = 0.013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + + L++H H mKIAA4236 419 YKCEE-CGKAFYTLsYLTQHKLGH 441 ZnF_C2H2: domain 9 of 25, from 447 to 469: score 28.8, E = 0.00076 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f ++ Lk+H+ +H mKIAA4236 447 YKCEE-CGKTFYYPsVLKEHLAIH 469 [output cut off at A = 10 top alignments] //