hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj05191/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4236 ( 919 res) mfj05191 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 538.4 5e-158 26 KRAB KRAB box 96.5 5.3e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 36 76 .. 1 41 [] 96.5 5.3e-25 zf-C2H2 1/26 112 135 .. 1 24 [] 16.0 0.89 zf-C2H2 2/26 168 190 .. 1 24 [] 1.0 79 zf-C2H2 3/26 196 218 .. 1 24 [] 27.9 0.00024 zf-C2H2 4/26 224 246 .. 1 24 [] 23.3 0.0057 zf-C2H2 5/26 308 329 .. 1 24 [] 7.7 18 zf-C2H2 6/26 335 357 .. 1 24 [] 27.2 0.00039 zf-C2H2 7/26 363 385 .. 1 24 [] 29.1 0.0001 zf-C2H2 8/26 391 413 .. 1 24 [] 33.5 5e-06 zf-C2H2 9/26 419 441 .. 1 24 [] 31.0 2.7e-05 zf-C2H2 10/26 447 469 .. 1 24 [] 32.2 1.2e-05 zf-C2H2 11/26 475 497 .. 1 24 [] 28.4 0.00017 zf-C2H2 12/26 503 525 .. 1 24 [] 30.1 5.1e-05 zf-C2H2 13/26 531 553 .. 1 24 [] 33.5 4.8e-06 zf-C2H2 14/26 559 581 .. 1 24 [] 28.2 0.00019 zf-C2H2 15/26 587 609 .. 1 24 [] 27.9 0.00023 zf-C2H2 16/26 615 637 .. 1 24 [] 28.9 0.00012 zf-C2H2 17/26 643 665 .. 1 24 [] 30.0 5.3e-05 zf-C2H2 18/26 671 693 .. 1 24 [] 33.5 4.8e-06 zf-C2H2 19/26 699 721 .. 1 24 [] 30.1 5.2e-05 zf-C2H2 20/26 727 749 .. 1 24 [] 34.3 2.8e-06 zf-C2H2 21/26 755 777 .. 1 24 [] 30.6 3.7e-05 zf-C2H2 22/26 783 805 .. 1 24 [] 27.9 0.00023 zf-C2H2 23/26 811 833 .. 1 24 [] 28.9 0.00012 zf-C2H2 24/26 839 861 .. 1 24 [] 30.9 3e-05 zf-C2H2 25/26 867 889 .. 1 24 [] 34.3 2.8e-06 zf-C2H2 26/26 895 917 .. 1 24 [] 27.0 0.00043 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 36 to 76: score 96.5, E = 5.3e-25 *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-* ++F+DVAVdF+ EEW++L paQ nLYrdVMlENy++Lv+lg mKIAA4236 36 LSFRDVAVDFSAEEWECLEPAQWNLYRDVMLENYSHLVFLG 76 zf-C2H2: domain 1 of 26, from 112 to 135: score 16.0, E = 0.89 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC+ +Cgk++ +s L H+rt+ mKIAA4236 112 YKCK-ECGKACDWNSLLLEHQRTnP 135 zf-C2H2: domain 2 of 26, from 168 to 190: score 1.0, E = 79 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+ ++ s+ + +r++ mKIAA4236 168 CKCE-ECGKVICTCSENSSYQRIC 190 zf-C2H2: domain 3 of 26, from 196 to 218: score 27.9, E = 0.00024 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s L +H H mKIAA4236 196 YKCE-ECGKAFSSHSCLAQHEVEH 218 zf-C2H2: domain 4 of 26, from 224 to 246: score 23.3, E = 0.0057 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F +s+L+ H+++H mKIAA4236 224 YNCE-ECGKLFYCPSHLTEHQKIH 246 zf-C2H2: domain 5 of 26, from 308 to 329: score 7.7, E = 18 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg +F++ ++ + +++H mKIAA4236 308 FKCE-ECGNAFCTLHSVSK-MKIH 329 zf-C2H2: domain 6 of 26, from 335 to 357: score 27.2, E = 0.00039 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++ +L +H+ H mKIAA4236 335 YKCE-ECGKAFATHLSLIQHKIGH 357 zf-C2H2: domain 7 of 26, from 363 to 385: score 29.1, E = 0.0001 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +snLk+H+ tH mKIAA4236 363 YQCE-ECGKMFYCSSNLKQHQITH 385 zf-C2H2: domain 8 of 26, from 391 to 413: score 33.5, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ +L +Hlr+H mKIAA4236 391 YKCE-VCGKVFRTCWQLSKHLRIH 413 zf-C2H2: domain 9 of 26, from 419 to 441: score 31.0, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s L++H+ H mKIAA4236 419 YKCE-ECGKAFYTLSYLTQHKLGH 441 zf-C2H2: domain 10 of 26, from 447 to 469: score 32.2, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s Lk Hl +H mKIAA4236 447 YKCE-ECGKTFYYPSVLKEHLAIH 469 zf-C2H2: domain 11 of 26, from 475 to 497: score 28.4, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++s rH+r+H mKIAA4236 475 YRCD-ECGKDFCTRSGRSRHQRIH 497 zf-C2H2: domain 12 of 26, from 503 to 525: score 30.1, E = 5.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s L +H+ +H mKIAA4236 503 YKCE-QCGKAFSTHSYLSHHKIVH 525 zf-C2H2: domain 13 of 26, from 531 to 553: score 33.5, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s Lk H+r+H mKIAA4236 531 YKCE-ECGKKFYYPSRLKEHQRIH 553 zf-C2H2: domain 14 of 26, from 559 to 581: score 28.2, E = 0.00019 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++s +++H+ H mKIAA4236 559 YKCE-ICGKAFYTHSYFTQHKLGH 581 zf-C2H2: domain 15 of 26, from 587 to 609: score 27.9, E = 0.00023 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s Lk Hl +H mKIAA4236 587 YKCE-ECGKTFYYPSILKEHLAIH 609 zf-C2H2: domain 16 of 26, from 615 to 637: score 28.9, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++s rH+r+H mKIAA4236 615 YRCE-ECGKDFCTRSGRSRHQRIH 637 zf-C2H2: domain 17 of 26, from 643 to 665: score 30.0, E = 5.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs++s L++H+ +H mKIAA4236 643 HKCE-ECGKVFSTHSYLTQHKVVH 665 zf-C2H2: domain 18 of 26, from 671 to 693: score 33.5, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s Lk H+r+H mKIAA4236 671 YKCE-ECGKKFYYPSRLKEHQRIH 693 zf-C2H2: domain 19 of 26, from 699 to 721: score 30.1, E = 5.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg +F++++ L +H+r H mKIAA4236 699 YKCE-ICGNVFCTPKGLSKHQRFH 721 zf-C2H2: domain 20 of 26, from 727 to 749: score 34.3, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s Lk H+r+H mKIAA4236 727 YKCE-ECGKMFYYPSRLKEHQRIH 749 zf-C2H2: domain 21 of 26, from 755 to 777: score 30.6, E = 3.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++s L++H+ H mKIAA4236 755 YKCE-ICGKAFYTHSYLTQHKLGH 777 zf-C2H2: domain 22 of 26, from 783 to 805: score 27.9, E = 0.00023 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s Lk Hl +H mKIAA4236 783 YKCE-ECGKTFYYPSILKEHLAIH 805 zf-C2H2: domain 23 of 26, from 811 to 833: score 28.9, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++s rH+r+H mKIAA4236 811 YRCE-ECGKDFCTRSGRSRHQRIH 833 zf-C2H2: domain 24 of 26, from 839 to 861: score 30.9, E = 3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s L +H+ +H mKIAA4236 839 YKCE-QCGKAFSTHSYLSQHKVVH 861 zf-C2H2: domain 25 of 26, from 867 to 889: score 34.3, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s Lk H+r+H mKIAA4236 867 YKCE-ECGKMFYYPSRLKEHQRIH 889 zf-C2H2: domain 26 of 26, from 895 to 917: score 27.0, E = 0.00043 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs + +L +Hl +H mKIAA4236 895 YKCE-VCGKVFSAHLELATHLSIH 917 //