hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph00083/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4234 ( 105 res) mph00083 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 50.9 1.7e-10 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/4 1 18 [. 1 23 [] 1.7 2e+02 ZnF_C2H2 2/4 24 46 .. 1 23 [] 26.2 0.0045 ZnF_C2H2 3/4 52 74 .. 1 23 [] 23.7 0.026 ZnF_C2H2 4/4 80 102 .. 1 23 [] 22.5 0.058 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 4, from 1 to 18: score 1.7, E = 2e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* C ksfs k+ L++H rvH mKIAA4234 1 ------CEKSFSEKsKLTNHCRVH 18 ZnF_C2H2: domain 2 of 4, from 24 to 46: score 26.2, E = 0.0045 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ Cgksf +k++L +H r+H mKIAA4234 24 HACPE-CGKSFIRKhHLLEHRRIH 46 ZnF_C2H2: domain 3 of 4, from 52 to 74: score 23.7, E = 0.026 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+f++k++L +H+r H mKIAA4234 52 YHCAE-CGKRFTQKhHLLEHQRAH 74 ZnF_C2H2: domain 4 of 4, from 80 to 102: score 22.5, E = 0.058 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C k+f+ k++Lk H+r+H mKIAA4234 80 YPCTH-CAKCFRYKqSLKYHLRTH 102 //