hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00083/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4234  ( 105 res)   mph00083

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          60.9    2.7e-14   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/4       1    18 [.     1    24 []    -1.3  1.3e+02
zf-C2H2    2/4      24    46 ..     1    24 []    31.2  2.4e-05
zf-C2H2    3/4      52    74 ..     1    24 []    29.1   0.0001
zf-C2H2    4/4      80   102 ..     1    24 []    25.5   0.0013

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 4, from 1 to 18: score -1.3, E = 1.3e+02
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                            C ksFs ks L++H r+H   
   mKIAA4234     1    ------CEKSFSEKSKLTNHCRVH    18   

zf-C2H2: domain 2 of 4, from 24 to 46: score 31.2, E = 2.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + Cp +CgksF rk++L  H+r+H   
   mKIAA4234    24    HACP-ECGKSFIRKHHLLEHRRIH    46   

zf-C2H2: domain 3 of 4, from 52 to 74: score 29.1, E = 0.0001
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cgk+F++k++L  H+r H   
   mKIAA4234    52    YHCA-ECGKRFTQKHHLLEHQRAH    74   

zf-C2H2: domain 4 of 4, from 80 to 102: score 25.5, E = 0.0013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C k+F+ k +Lk HlrtH   
   mKIAA4234    80    YPCT-HCAKCFRYKQSLKYHLRTH    102  

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