hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj06028/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4231  ( 1467 res)   mfj06028

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
COLFI    Fibrillar collagens C-terminal domain          565.9   1.5e-165   1
VWC      von Willebrand factor (vWF) type C domain       82.3      6e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWC        1/1      36    92 ..     1    75 []    82.3    6e-20
COLFI      1/1    1232  1467 .]     1   240 []   565.9 1.5e-165

Alignments of top-scoring domains:
VWC: domain 1 of 1, from 36 to 92: score 82.3, E = 6e-20
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      C h  G++y ++++Wkp+ pCqiC+C++g +vlCd+++C ++p+   
   mKIAA4231    36    CSH-LGQSYESRDVWKPE-PCQICVCDSG-SVLCDDIICDEEPL--- 76   

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                      dCpnp       e+p+GeCC   +C   
   mKIAA4231    77 ---DCPNP-------EIPFGECCA--IC    92   

COLFI: domain 1 of 1, from 1232 to 1467: score 565.9, E = 1.5e-165
                   *->deeifasLkslnnLHKqIEqlksPtGskdnPARtCkDLkLcHpelkd
                      +eei++sLks+n    qIE+l sP+Gs++nPAR+C+DLk+cHpelk+
   mKIAA4231  1232    TEEIMSSLKSVNG---QIESLISPDGSRKNPARNCRDLKFCHPELKS 1275 

                   GeYWvDPNqGCirDAikVfCnfetGvgeTCvspspssiprktWys..gks
                   GeYWvDPNqGC++DAikVfCn+et  geTC+ +sp ++prk W++++g++
   mKIAA4231  1276 GEYWVDPNQGCKMDAIKVFCNMET--GETCINASPMTVPRKHWWTdsGAE 1323 

                   kdkkhvWFgetmngGfkFsYgdsegsp.vgvvQLTFLRLLSteAsQniTY
                     kkhvWFge+mngGf+FsYg ++++++v +vQL+FLRLLS++AsQniTY
   mKIAA4231  1324 --KKHVWFGESMNGGFQFSYGPPDLPEdVVDVQLAFLRLLSSRASQNITY 1371 

                   hCKNSvAYmDeatGNlkkAlilrgsnDvElsaegnskftYeVLeDGCqkr
                   hCKNS+AYmD+a+GN+kk l+l+gsn+ E +aegnskftY+VLeDGC+k+
   mKIAA4231  1372 HCKNSIAYMDQASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCTKH 1421 

                   tgkwgKTViEyrTkkteRLPIvDiAPsDIGGadQeFGveiGPVCFs<-*
                   tg+w+KTV+Ey T+k +RLPI+DiAP DIGG+dQeFGv+iGPVCF+   
   mKIAA4231  1422 TGEWSKTVFEYQTRKAMRLPIIDIAPYDIGGPDQEFGVDIGPVCFL    1467 

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