hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj06028/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4231 ( 1467 res) mfj06028 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Collagen Collagen triple helix repeat (20 copies) 891.9 1.9e-264 18 COLFI Fibrillar collagen C-terminal domain 540.9 8.6e-159 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Collagen 1/18 99 157 .. 1 60 [] -3.4 0.0026 Collagen 2/18 170 229 .. 1 60 [] 54.8 1.9e-12 Collagen 3/18 236 295 .. 1 60 [] 74.2 2.7e-18 Collagen 4/18 296 355 .. 1 60 [] 68.3 1.6e-16 Collagen 5/18 356 415 .. 1 60 [] 62.1 1.2e-14 Collagen 6/18 416 475 .. 1 60 [] 62.7 7.8e-15 Collagen 7/18 476 535 .. 1 60 [] 58.2 1.8e-13 Collagen 8/18 536 595 .. 1 60 [] 66.2 7.2e-16 Collagen 9/18 596 655 .. 1 60 [] 51.3 2.2e-11 Collagen 10/18 656 715 .. 1 60 [] 42.2 1.2e-08 Collagen 11/18 716 775 .. 1 60 [] 59.3 8.5e-14 Collagen 12/18 779 838 .. 1 60 [] 59.7 6.4e-14 Collagen 13/18 839 898 .. 1 60 [] 48.8 1.2e-10 Collagen 14/18 899 958 .. 1 60 [] 59.6 6.9e-14 Collagen 15/18 959 1018 .. 1 60 [] 61.6 1.7e-14 Collagen 16/18 1019 1078 .. 1 60 [] 57.4 3e-13 Collagen 17/18 1079 1138 .. 1 60 [] 76.0 8.1e-19 Collagen 18/18 1139 1198 .. 1 60 [] 68.8 1.2e-16 COLFI 1/1 1249 1466 .. 1 226 [] 540.9 8.6e-159 Alignments of top-scoring domains: Collagen: domain 1 of 18, from 99 to 157: score -3.4, E = 0.0026 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp +p +p + Gp+Gp+G+pGppG +G G+pG pG pG PGppG pG mKIAA4231 99 -APVLPDGHGPQGPKGDPGPPGIPGRNGDPGLPGQPGLPGPPGSPGI 144 pGppGapGapGpp<-* G p mKIAA4231 145 CESCPTGGQNYSP 157 Collagen: domain 2 of 18, from 170 to 229: score 54.8, E = 1.9e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G G pGp+GppGppGppG G++G+pG+pG +G+pG+PG++Gp+Gp mKIAA4231 170 GMGGYPGPAGPPGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGP 216 pGppGapGapGpp<-* pGppGa G++Gp+ mKIAA4231 217 PGPPGALGPAGPA 229 Collagen: domain 3 of 18, from 236 to 295: score 74.2, E = 2.7e-18 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pG+pG++G+pGppG +Gp+G +G+pG++G++G++G+ G +G+ G+ mKIAA4231 236 GRPGRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGA 282 pGppGapGapGpp<-* pG +G+ G pG + mKIAA4231 283 PGLKGENGLPGDN 295 Collagen: domain 4 of 18, from 296 to 355: score 68.3, E = 1.6e-16 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pGp+Gp+G+pG++G+pG pG+aGa+G+ G++G +G+PGppGppG mKIAA4231 296 GAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGT 342 pGppGapGapGpp<-* +G pG pGa+G++ mKIAA4231 343 AGFPGSPGAKGEV 355 Collagen: domain 5 of 18, from 356 to 415: score 62.1, E = 1.2e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+G+pG++G pG++G+pGp+G+aGa+GppGppG +G+PG +G++Gp mKIAA4231 356 GPAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGP 402 pGppGapGapGpp<-* +G pGapG G++ mKIAA4231 403 AGIPGAPGLIGAR 415 Collagen: domain 6 of 18, from 416 to 475: score 62.7, E = 7.8e-15 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppGp+G +G pG +Gp+G+pG +Ga+G+pG++Ge+G+ G+pG pGp mKIAA4231 416 GPPGPAGTNGIPGTRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGP 462 pGppGapGapGpp<-* +G++G++G+pG+p mKIAA4231 463 KGEDGKDGSPGEP 475 Collagen: domain 7 of 18, from 476 to 535: score 58.2, E = 1.8e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G+pG++G++Gp G +Gp+Gp+G pG++GppGe+G PGp+Gp G mKIAA4231 476 GANGLPGAAGERGPSGFRGPAGPNGIPGEKGPPGERGGPGPAGPRGV 522 pGppGapGapGpp<-* +G+pG++G pG p mKIAA4231 523 AGEPGRDGTPGGP 535 Collagen: domain 8 of 18, from 536 to 595: score 66.2, E = 7.2e-16 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G pG+pG pG +G+pGppG +G+ G pGppG++Gp G+pG++G+ mKIAA4231 536 GIRGMPGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGF 582 pGppGapGapGpp<-* pGp+G++GapG++ mKIAA4231 583 PGPKGNDGAPGKN 595 Collagen: domain 9 of 18, from 596 to 655: score 51.3, E = 2.2e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++G pG+pG+pGp+G+ G++Gp+G+pGp Gp+G++G GppGp G mKIAA4231 596 GERGGPGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGDSGPPGPQGL 642 pGppGapGapGpp<-* +G pG G+pG++ mKIAA4231 643 QGIPGTGGPPGEN 655 Collagen: domain 10 of 18, from 656 to 715: score 42.2, E = 1.2e-08 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pG+pGp+G+ G+pG+pG +G++GapG++GppG +G PG++G +Gp mKIAA4231 656 GKPGEPGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGIPGARGGAGP 702 pGppGapGapGpp<-* pGp+G +G++Gpp mKIAA4231 703 PGPEGGKGPAGPP 715 Collagen: domain 11 of 18, from 716 to 775: score 59.3, E = 8.5e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppG G+pG++G+pG++G pG +G++G++G pG +G++G pG++Gp mKIAA4231 716 GPPGASGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGP 762 pGppGapGapGpp<-* +Gp+G++G+pGp+ mKIAA4231 763 RGPAGPIGPPGPA 775 Collagen: domain 12 of 18, from 779 to 838: score 59.7, E = 6.4e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G+ G+pG+pG +Gp+G pG++G+ GppGp+G+pG+PG+ G+pG+ mKIAA4231 779 GDKGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGA 825 pGppGapGapGpp<-* +G++GapG++G+ mKIAA4231 826 KGERGAPGEKGEG 838 Collagen: domain 13 of 18, from 839 to 898: score 48.8, E = 1.2e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppGp+Gp G Gp+GppGp+G +G++G+pG pG +G+PG +G pGp mKIAA4231 839 GPPGPAGPTGSSGPAGPPGPQGVKGERGSPGGPGTAGFPGGRGLPGP 885 pGppGapGapGpp<-* pG+ G+pG+pGp mKIAA4231 886 PGNNGNPGPPGPS 898 Collagen: domain 14 of 18, from 899 to 958: score 59.6, E = 6.9e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pG+ GppGp+G G pG pG aG++G++G pGe+GpPG++GppG+ mKIAA4231 899 GAPGKDGPPGPAGNSGSPGNPGIAGPKGDAGQPGEKGPPGAQGPPGS 945 pGppGapGapGpp<-* pGp G +G G++ mKIAA4231 946 PGPLGIAGLTGAR 958 Collagen: domain 15 of 18, from 959 to 1018: score 61.6, E = 1.7e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +GppG pGp+G pGp G +G++G+pG G+ Ge+GpPGp+G pG+ mKIAA4231 959 GLAGPPGMPGPRGSPGPQGIKGESGKPGASGHNGERGPPGPQGLPGQ 1005 pGppGapGapGpp<-* pG +G+pG G p mKIAA4231 1006 PGTAGEPGRDGNP 1018 Collagen: domain 16 of 18, from 1019 to 1078: score 57.4, E = 3e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G G+pG+ G pG +G++G+ G +GapG pG+pG+pGp Gp G+ G mKIAA4231 1019 GSDGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGD 1065 pGppGapGapGpp<-* +G++G++G+ G+p mKIAA4231 1066 RGETGPAGPSGAP 1078 Collagen: domain 17 of 18, from 1079 to 1138: score 76.0, E = 8.1e-19 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+G +G+pGp+Gp+G++G++G++G+ G +G++G+pG PGppG pG+ mKIAA4231 1079 GPAGARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGA 1125 pGppGapGapGpp<-* +G +Ga+G+pGp+ mKIAA4231 1126 AGHQGAIGSPGPA 1138 Collagen: domain 18 of 18, from 1139 to 1198: score 68.8, E = 1.2e-16 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+Gp Gp GppG +G +G+pGp G+pGp+G++Ge+G+ G+pG+pG+ mKIAA4231 1139 GPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQ 1185 pGppGapGapGpp<-* pGppG+pGapGp+ mKIAA4231 1186 PGPPGPPGAPGPC 1198 COLFI: domain 1 of 1, from 1249 to 1466: score 540.9, E = 8.6e-159 *->lksPeGksrknPARtCkDLfLchpefksGeYWiDPNqGCikDAikVf l+sP+G srknPAR+C+DL++chpe ksGeYW+DPNqGC++DAikVf mKIAA4231 1249 LISPDG-SRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVF 1294 CnkrfetGvgeTCisptpksvpkRiksWykgkskdkKhvWFgetmegGfk Cn +etG eTCi ++p vp+ k+W++++ ++kKhvWFge+m+gGf+ mKIAA4231 1295 CN--METG--ETCINASPMTVPR--KHWWTDSGAEKKHVWFGESMNGGFQ 1338 fsYiddelnpeisnvQlTFLRLLSteAsQNiTYhCKNSvAYmDeatGNlk fsY+ + l++++++vQl+FLRLLS++AsQNiTYhCKNS+AYmD+a+GN+k mKIAA4231 1339 FSYGPPDLPEDVVDVQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVK 1388 kAlilmgSnDvElsadgnskFtYtvlGeDGCssrtgewgKTViEyeTkKt k l lmgSn+ E++a+gnskFtYtvl eDGC+++tgew+KTV+Ey T+K+ mKIAA4231 1389 KSLKLMGSNEGEFKAEGNSKFTYTVL-EDGCTKHTGEWSKTVFEYQTRKA 1437 tRLPIvDiApsDiGgedQeFGveiGPVCF<-* RLPI+DiAp+DiGg+dQeFGv+iGPVCF mKIAA4231 1438 MRLPIIDIAPYDIGGPDQEFGVDIGPVCF 1466 //