hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00138/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4230 ( 408 res) mbg00138 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S_TKc Serine/Threonine protein kinases, catalytic 376.3 1.9e-108 1 TyrKc Tyrosine kinase, catalytic domain 105.5 6.1e-27 1 UBA Ubiquitin associated domain 44.1 1.8e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TyrKc 1/1 64 314 .. 1 280 [] 105.5 6.1e-27 S_TKc 1/1 64 315 .. 1 231 [] 376.3 1.9e-108 UBA 1/1 336 373 .. 1 38 [] 44.1 1.8e-08 Alignments of top-scoring domains: TyrKc: domain 1 of 1, from 64 to 314: score 105.5, E = 6.1e-27 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr +l+k++G G+F +V +++ + +++eVA+K + + ++++++ + r mKIAA4230 64 YRLLKTIGKGNFAKVKLARHIltgREVAIKIIDKTQlnptsLQKLFR 110 EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy E +iMk l +HpNiVkL+ v+ +e + l+++mEy++gG dy mKIAA4230 111 EVRIMKIL--NHPNIVKLFEVIETE-------KTLYLIMEYASGGEVFDY 151 LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv L ++++ + ++ QI + +Y ++k++vHRDL A N L++++ + mKIAA4230 152 LVAHGR-MKEKEARAKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNI 200 KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk KI+DFG s + + + ++ + +g P+ APE ++ +k mKIAA4230 201 KIADFGFSNEFTVG------SKLDTF----CGS--PPYA--APELFQGKK 236 Ft.skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp + +++ DVWS GV L+ + + G P g + +e++e++ +G + mKIAA4230 237 YDgPEVDVWSLGVILYTLVS-GSLPFDG-----QNLKELRERVLRG-KYR 279 kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-* +P + ++++ +l ++ +P +R t +++ ++r+ mKIAA4230 280 IPFY--------MSTDCENLLKRFLVLNPVKRGTLEQImKDRW 314 S_TKc: domain 1 of 1, from 64 to 315: score 376.3, E = 1.9e-108 *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr Y+llk++GkG F+kV+lar++ tgr+vAiK+i++++ ++++ +++ r mKIAA4230 64 YRLLKTIGKGNFAKVKLARHILTGREVAIKIIDktqlnptslQKLFR 110 EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr E++i+k +HPNIVkL++v+e+++ lyl+mEy++G G++fd+l+ +gr mKIAA4230 111 EVRIMKIlNHPNIVKLFEVIETeKTLYLIMEYASG--GEVFDYLVAHGR- 157 glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl + E+ear frQi+sa++Y+H+++I+HRDLK eN+LLd + ++K+ mKIAA4230 158 -----MKEkEARAKFRQIVSAVQYCHQKRIVHRDLKAENLLLDAdmNIKI 202 aDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily aDFG++ +++ +++ +tf+G+p Y APE++++++Y++p+vD+WSlG+ily mKIAA4230 203 ADFGFSNEFtvgsklDTFCGSPPYAAPELFqgkKYDGPEVDVWSLGVILY 252 ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek l++G PF++++l+++ +++++++++ + + S ++ +L+k+ Lv +P k mKIAA4230 253 TLVSGSLPFDgqNLKELRERVLrgkyripfymSTDCENLLKRFLVLNPVK 302 Rlta.eaLedeldikaHPff<-* R t +++++ + ++ mKIAA4230 303 RGTLeQIMK-------DRWI 315 UBA: domain 1 of 1, from 336 to 373: score 44.1, E = 1.8e-08 *->deekieqLleMGFsreeavdALratngNverAaeyLls<-* d+++i+ +++MG+s+ee++++L++ ++++ +A+++Ll mKIAA4230 336 DQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLLLG 373 //