hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj48069/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4229  ( 450 res)   mfj48069

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    177.8    1.1e-48   8
KRAB     krueppel associated box                         83.7    2.2e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      63   124 ..     1    62 []    83.7  2.2e-20
ZnF_C2H2   1/8     212   234 ..     1    23 []    27.4   0.0019
ZnF_C2H2   2/8     240   262 ..     1    23 []    29.9  0.00036
ZnF_C2H2   3/8     268   290 ..     1    23 []    26.8   0.0029
ZnF_C2H2   4/8     296   318 ..     1    23 []    29.5  0.00047
ZnF_C2H2   5/8     324   346 ..     1    23 []    28.1   0.0012
ZnF_C2H2   6/8     352   374 ..     1    23 []    28.0   0.0013
ZnF_C2H2   7/8     380   402 ..     1    23 []    23.6    0.028
ZnF_C2H2   8/8     408   430 ..     1    23 []    30.4  0.00024

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 63 to 124: score 83.7, E = 2.2e-20
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtFeDVAV+F + EW+ L+paQr+LYRdVMlENY+n++SL+g + + 
   mKIAA4229    63    VTFEDVAVYFIWREWKRLEPAQRDLYRDVMLENYGNVFSLDGDSKTG 109  

                   p.dliskLEqgeEpwi<-*
                    +++is    g    i   
   mKIAA4229   110 NdRVISEG-MGSCEMI    124  

ZnF_C2H2: domain 1 of 8, from 212 to 234: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+ksf++ ++L++H+r+H   
   mKIAA4229   212    HKCDE-CSKSFNRTsDLIQHQRIH    234  

ZnF_C2H2: domain 2 of 8, from 240 to 262: score 29.9, E = 0.00036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+  +L++H+r+H   
   mKIAA4229   240    YECSE-CGKAFSQSaHLIQHQRIH    262  

ZnF_C2H2: domain 3 of 8, from 268 to 290: score 26.8, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk+fs  +aL+ H+r+H   
   mKIAA4229   268    YECKD-CGKTFSCSsALILHQRIH    290  

ZnF_C2H2: domain 4 of 8, from 296 to 318: score 29.5, E = 0.00047
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+ + L++H+r+H   
   mKIAA4229   296    YECNE-CGKTFSWSsTLTHHQRIH    318  

ZnF_C2H2: domain 5 of 8, from 324 to 346: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk fs+ + L++H+r+H   
   mKIAA4229   324    YACNE-CGKAFSRSsTLIHHQRIH    346  

ZnF_C2H2: domain 6 of 8, from 352 to 374: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L +H+r+H   
   mKIAA4229   352    YECNE-CGKAFSQSsHLYQHQRIH    374  

ZnF_C2H2: domain 7 of 8, from 380 to 402: score 23.6, E = 0.028
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cg +f+  + L++H+r+H   
   mKIAA4229   380    YECME-CGGKFTYSsGLIQHQRIH    402  

ZnF_C2H2: domain 8 of 8, from 408 to 430: score 30.4, E = 0.00024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  +aL+rH+r+H   
   mKIAA4229   408    YECSE-CGKAFRYSsALVRHQRIH    430  

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