hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj48069/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4229  ( 450 res)   mfj48069

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         233.4    3.2e-66   8
KRAB     KRAB box                                        97.1    3.5e-25   1
E6       Early Protein (E6)                             -55.6       0.42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      63   103 ..     1    41 []    97.1  3.5e-25
zf-C2H2    1/8     212   234 ..     1    24 []    32.5  9.7e-06
zf-C2H2    2/8     240   262 ..     1    24 []    38.1    2e-07
zf-C2H2    3/8     268   290 ..     1    24 []    30.7  3.4e-05
zf-C2H2    4/8     296   318 ..     1    24 []    37.6  2.9e-07
zf-C2H2    5/8     324   346 ..     1    24 []    38.1  1.9e-07
zf-C2H2    6/8     352   374 ..     1    24 []    38.0  2.2e-07
E6         1/1     298   385 ..     1   110 []   -55.6     0.42
zf-C2H2    7/8     380   402 ..     1    24 []    27.3  0.00037
zf-C2H2    8/8     408   430 ..     1    24 []    38.0  2.1e-07

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 63 to 103: score 97.1, E = 3.5e-25
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      VtFeDVAV+F + EW++L paQr+LYrdVMlENy+n++Sl+   
   mKIAA4229    63    VTFEDVAVYFIWREWKRLEPAQRDLYRDVMLENYGNVFSLD    103  

zf-C2H2: domain 1 of 8, from 212 to 234: score 32.5, E = 9.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C ksF+r s+L +H+r+H   
   mKIAA4229   212    HKCD-ECSKSFNRTSDLIQHQRIH    234  

zf-C2H2: domain 2 of 8, from 240 to 262: score 38.1, E = 2e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++++L +H+r+H   
   mKIAA4229   240    YECS-ECGKAFSQSAHLIQHQRIH    262  

zf-C2H2: domain 3 of 8, from 268 to 290: score 30.7, E = 3.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCgk+Fs +s L  H+r+H   
   mKIAA4229   268    YECK-DCGKTFSCSSALILHQRIH    290  

zf-C2H2: domain 4 of 8, from 296 to 318: score 37.6, E = 2.9e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs +s+L++H+r+H   
   mKIAA4229   296    YECN-ECGKTFSWSSTLTHHQRIH    318  

zf-C2H2: domain 5 of 8, from 324 to 346: score 38.1, E = 1.9e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cgk+Fsr+s+L +H+r+H   
   mKIAA4229   324    YACN-ECGKAFSRSSTLIHHQRIH    346  

zf-C2H2: domain 6 of 8, from 352 to 374: score 38.0, E = 2.2e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++s+L +H+r+H   
   mKIAA4229   352    YECN-ECGKAFSQSSHLYQHQRIH    374  

E6: domain 1 of 1, from 298 to 385: score -55.6, E = 0.42
                   *->CvFCkkfLtraEvyaFafkdLrvVwRdgcpyaaCskClrfyaklefy
                      C+ C k+ ++   +  +++    ++++++pya C  C  + ++ + +
   mKIAA4229   298    CNECGKTFSWSSTLTHHQR----IHTGEKPYA-CNECGKAFSRSSTL 339  

                   rhyqySvygdtlEeetgkslldllIRCyrClKpLspeEKlrhvyekerFh
                    h+q+   g+  +e            C  C+K  s +    h+y+++r h
   mKIAA4229   340 IHHQRIHTGEKPYE------------CNECGKAFSQS---SHLYQHQRIH 374  

                   kirgrWrG....rCrhC<-*
                         +G+++  C+ C   
   mKIAA4229   375 ------TGekpyECMEC    385  

zf-C2H2: domain 7 of 8, from 380 to 402: score 27.3, E = 0.00037
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cg +F+ +s L +H+r+H   
   mKIAA4229   380    YECM-ECGGKFTYSSGLIQHQRIH    402  

zf-C2H2: domain 8 of 8, from 408 to 430: score 38.0, E = 2.1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+ +s L rH+r+H   
   mKIAA4229   408    YECS-ECGKAFRYSSALVRHQRIH    430  

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