hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj21276/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4228  ( 1123 res)   mfj21276

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HOX      Homeodomain                                    151.7    7.5e-41   2
ZnF_C2H2 zinc finger                                     34.6    1.4e-05   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HOX        1/2      47   109 ..     1    63 []    81.8  8.2e-20
ZnF_C2H2   1/4     117   140 ..     1    23 []    21.0     0.17
HOX        2/2     351   413 ..     1    63 []    73.3    3e-17
ZnF_C2H2   2/4     429   453 ..     1    23 []    12.5       12
ZnF_C2H2   3/4     889   909 ..     1    23 []     1.5  2.1e+02
ZnF_C2H2   4/4     949   973 ..     1    23 []     9.6       26

Alignments of top-scoring domains:
HOX: domain 1 of 2, from 47 to 109: score 81.8, E = 8.2e-20
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                       +r Rt++tpeQle+L + +  + +P+r++++++A+e gL +r+V+v
   mKIAA4228    47    DKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 93   

                   WFQNRRakwkrqekkk<-*
                   WFQN Ra++++ + +    
   mKIAA4228    94 WFQNTRARERKGQFRA    109  

ZnF_C2H2: domain 1 of 4, from 117 to 140: score 21.0, E = 0.17
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +Cp+ C   f+ k+aL+ H+r++H   
   mKIAA4228   117    RRCPF-CRALFKAKtALEAHIRsRH    140  

HOX: domain 2 of 2, from 351 to 413: score 73.3, E = 3e-17
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      ++r Rt  t+ Ql++L+  F++ + P+  e e L + +gL++r+V+v
   mKIAA4228   351    QKRFRTQMTNLQLKVLKSCFNDYRTPTMLECEVLGNDIGLPKRVVQV 397  

                   WFQNRRakwkrqekkk<-*
                   WFQN+Rak+k+++ ++   
   mKIAA4228   398 WFQNARAKEKKSKLSM    413  

ZnF_C2H2: domain 2 of 4, from 429 to 453: score 12.5, E = 12
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                       +C++ Cg ++s + + + H+ +++H   
   mKIAA4228   429    TECTL-CGIKYSARlSVRDHIFsqQH    453  

ZnF_C2H2: domain 3 of 4, from 889 to 909: score 1.5, E = 2.1e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C+  f +++a + H++     
   mKIAA4228   889    LVCRK-CQAGFGDEeAARSHLK--    909  

ZnF_C2H2: domain 4 of 4, from 949 to 973: score 9.6, E = 26
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      y+C   C    + ++aL +H+ +  H   
   mKIAA4228   949    YHCLA-CESALCGEeALSQHLEsaLH    973  

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