hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mng/mng13251/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4227  ( 539 res)   mng13251

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     96.5    3.2e-24   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/6     141   163 ..     1    23 []    20.1     0.32
ZnF_C2H2   2/6     169   191 ..     1    23 []    30.9  0.00017
ZnF_C2H2   3/6     197   219 ..     1    23 []    25.9   0.0056
ZnF_C2H2   4/6     225   248 ..     1    23 []    20.9     0.18
ZnF_C2H2   5/6     482   504 ..     1    23 []    12.8       11
ZnF_C2H2   6/6     510   534 ..     1    23 []    18.1      1.2

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 6, from 141 to 163: score 20.1, E = 0.32
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC+i Cg ++  ++ L  H r+H   
   mKIAA4227   141    LKCDI-CGIVCIGPnVLMVHKRSH    163  

ZnF_C2H2: domain 2 of 6, from 169 to 191: score 30.9, E = 0.00017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg sf++k++L rH++ H   
   mKIAA4227   169    FQCNQ-CGASFTQKgNLLRHIKLH    191  

ZnF_C2H2: domain 3 of 6, from 197 to 219: score 25.9, E = 0.0056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C++ +++++aL+ H+r+H   
   mKIAA4227   197    FKCHL-CNYACRRRdALTGHLRTH    219  

ZnF_C2H2: domain 4 of 6, from 225 to 248: score 20.9, E = 0.18
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC + Cg+s++++++L++H  + H   
   mKIAA4227   225    HKCGY-CGRSYKQRsSLEEHKErCH    248  

ZnF_C2H2: domain 5 of 6, from 482 to 504: score 12.8, E = 11
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C   f ++  ++ Hm  H   
   mKIAA4227   482    YKCEH-CRVLFLDHvMYTIHMGCH    504  

ZnF_C2H2: domain 6 of 6, from 510 to 534: score 18.1, E = 1.2
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C++ Cg++  ++ ++  H+ ++ H   
   mKIAA4227   510    FECNM-CGYHSQDRyEFSSHITrgEH    534  

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