hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mng/mng13251/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4227  ( 539 res)   mng13251

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          89.6    6.5e-23   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/6     141   163 ..     1    24 []    16.8     0.51
zf-C2H2    2/6     169   191 ..     1    24 []    34.9  1.9e-06
zf-C2H2    3/6     197   219 ..     1    24 []    25.3   0.0014
zf-C2H2    4/6     225   248 ..     1    24 []    24.2   0.0031
zf-C2H2    5/6     482   504 ..     1    24 []     5.0       32
zf-C2H2    6/6     510   534 ..     1    24 []    15.4      1.3

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 6, from 141 to 163: score 16.8, E = 0.51
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       kC+ +Cg ++  +  L  H+r+H   
   mKIAA4227   141    LKCD-ICGIVCIGPNVLMVHKRSH    163  

zf-C2H2: domain 2 of 6, from 169 to 191: score 34.9, E = 1.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg sF++k+nL rH++ H   
   mKIAA4227   169    FQCN-QCGASFTQKGNLLRHIKLH    191  

zf-C2H2: domain 3 of 6, from 197 to 219: score 25.3, E = 0.0014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+  C+++++r++ L+ HlrtH   
   mKIAA4227   197    FKCH-LCNYACRRRDALTGHLRTH    219  

zf-C2H2: domain 4 of 6, from 225 to 248: score 24.2, E = 0.0031
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC  +Cg+s++++s+L+ H+ + H   
   mKIAA4227   225    HKCG-YCGRSYKQRSSLEEHKERcH    248  

zf-C2H2: domain 5 of 6, from 482 to 504: score 5.0, E = 32
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C   F ++  ++ H+  H   
   mKIAA4227   482    YKCE-HCRVLFLDHVMYTIHMGCH    504  

zf-C2H2: domain 6 of 6, from 510 to 534: score 15.4, E = 1.3
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      ++C+  Cg+   +++++ +H+ +++H   
   mKIAA4227   510    FECN-MCGYHSQDRYEFSSHITRgeH    534  

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