hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf00382/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4226 ( 2225 res) mpf00382 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF_CA Calcium-binding EGF-like domain 1587.7 0 37 EGF Epidermal growth factor-like domain. 813.2 5.5e-240 37 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/37 82 120 .. 1 32 [] 34.3 1.7e-05 EGF_CA 1/37 79 120 .. 1 34 [] 55.2 8.3e-12 EGF_CA 2/37 121 162 .. 1 34 [] 60.2 2.6e-13 EGF 2/37 124 162 .. 1 32 [] 37.8 1.4e-06 EGF 3/37 166 202 .. 1 32 [] 29.6 0.00043 EGF_CA 3/37 163 202 .. 1 34 [] 47.2 2.2e-09 EGF_CA 4/37 266 307 .. 1 34 [] 52.3 6.1e-11 EGF 4/37 269 307 .. 1 32 [] 30.7 0.0002 EGF_CA 5/37 384 425 .. 1 34 [] 49.6 4.1e-10 EGF 5/37 387 425 .. 1 32 [] 25.6 0.007 EGF 6/37 429 468 .. 1 32 [] 24.5 0.015 EGF_CA 6/37 426 468 .. 1 34 [] 53.4 2.9e-11 EGF_CA 7/37 469 510 .. 1 34 [] 53.5 2.7e-11 EGF 7/37 472 510 .. 1 32 [] 30.1 0.00031 EGF_CA 8/37 511 552 .. 1 34 [] 56.3 4.1e-12 EGF 8/37 514 552 .. 1 32 [] 30.4 0.00025 EGF_CA 9/37 553 593 .. 1 34 [] 43.7 2.4e-08 EGF 9/37 556 593 .. 1 32 [] 22.6 0.056 EGF_CA 10/37 594 635 .. 1 34 [] 47.9 1.3e-09 EGF 10/37 597 635 .. 1 32 [] 28.0 0.0013 EGF_CA 11/37 636 677 .. 1 34 [] 44.0 2e-08 EGF 11/37 639 677 .. 1 32 [] 22.4 0.065 EGF 12/37 681 718 .. 1 32 [] 29.8 0.00038 EGF_CA 12/37 678 718 .. 1 34 [] 48.5 8.9e-10 EGF_CA 13/37 719 759 .. 1 34 [] 49.0 6.3e-10 EGF 13/37 722 759 .. 1 32 [] 34.0 2e-05 EGF 14/37 763 801 .. 1 32 [] 33.7 2.5e-05 EGF_CA 14/37 760 801 .. 1 34 [] 54.9 1e-11 EGF 15/37 805 842 .. 1 32 [] 26.4 0.0039 EGF_CA 15/37 802 842 .. 1 34 [] 45.5 7.1e-09 EGF_CA 16/37 843 883 .. 1 34 [] 46.8 2.8e-09 EGF 16/37 846 883 .. 1 32 [] 31.5 0.00011 EGF_CA 17/37 961 1002 .. 1 34 [] 55.1 9.1e-12 EGF 17/37 964 1002 .. 1 32 [] 32.5 5.9e-05 EGF_CA 18/37 1003 1044 .. 1 34 [] 47.8 1.4e-09 EGF 18/37 1006 1044 .. 1 32 [] 21.2 0.15 EGF_CA 19/37 1119 1160 .. 1 34 [] 58.4 9.5e-13 EGF 19/37 1122 1160 .. 1 32 [] 34.5 1.4e-05 EGF_CA 20/37 1161 1202 .. 1 34 [] 55.8 5.7e-12 EGF 20/37 1164 1202 .. 1 32 [] 36.1 4.7e-06 EGF 21/37 1206 1244 .. 1 32 [] 31.6 0.00011 EGF_CA 21/37 1203 1244 .. 1 34 [] 45.5 7.1e-09 EGF 22/37 1248 1283 .. 1 32 [] 32.2 7.1e-05 EGF_CA 22/37 1245 1283 .. 1 34 [] 55.3 8.1e-12 EGF_CA 23/37 1284 1326 .. 1 34 [] 57.7 1.5e-12 EGF 23/37 1287 1326 .. 1 32 [] 32.9 4.5e-05 EGF 24/37 1330 1366 .. 1 32 [] 32.6 5.5e-05 EGF_CA 24/37 1327 1366 .. 1 34 [] 54.2 1.7e-11 EGF 25/37 1370 1408 .. 1 32 [] 30.1 0.0003 EGF_CA 25/37 1367 1408 .. 1 34 [] 51.7 9.3e-11 EGF 26/37 1485 1523 .. 1 32 [] 37.8 1.5e-06 EGF_CA 26/37 1482 1523 .. 1 34 [] 53.0 3.8e-11 EGF_CA 27/37 1524 1563 .. 1 34 [] 54.4 1.5e-11 EGF 27/37 1527 1563 .. 1 32 [] 34.9 1.1e-05 EGF_CA 28/37 1564 1604 .. 1 34 [] 49.3 5e-10 EGF 28/37 1567 1604 .. 1 32 [] 30.7 0.0002 EGF 29/37 1608 1648 .. 1 32 [] 17.8 1.6 EGF_CA 29/37 1605 1648 .. 1 34 [] 37.5 1.9e-06 EGF 30/37 1652 1690 .. 1 32 [] 30.4 0.00024 EGF_CA 30/37 1649 1690 .. 1 34 [] 51.0 1.6e-10 EGF 31/37 1763 1801 .. 1 32 [] 31.7 0.0001 EGF_CA 31/37 1760 1801 .. 1 34 [] 58.1 1.1e-12 EGF_CA 32/37 1802 1842 .. 1 34 [] 49.7 3.9e-10 EGF 32/37 1805 1842 .. 1 32 [] 31.6 0.0001 EGF 33/37 1846 1881 .. 1 32 [] 29.6 0.00044 EGF_CA 33/37 1843 1881 .. 1 34 [] 51.6 1.1e-10 EGF_CA 34/37 1882 1924 .. 1 34 [] 45.2 8.6e-09 EGF 34/37 1885 1924 .. 1 32 [] 26.3 0.0042 EGF 35/37 1928 1964 .. 1 32 [] 25.0 0.01 EGF_CA 35/37 1925 1964 .. 1 34 [] 46.7 3.1e-09 EGF 36/37 1968 2005 .. 1 32 [] 22.1 0.08 EGF_CA 36/37 1965 2005 .. 1 34 [] 40.4 2.5e-07 EGF 37/37 2009 2045 .. 1 32 [] 23.4 0.031 EGF_CA 37/37 2006 2045 .. 1 34 [] 46.1 4.7e-09 Alignments of top-scoring domains: EGF: domain 1 of 37, from 82 to 120: score 34.3, E = 1.7e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eCa +++ C nG +C + ++sy+C+C Gy+ + ++++C+ mKIAA4226 82 ECAldpdICANG------ICEnlrgSYRCnCN-SGYEPdasgrNCI 120 -* mKIAA4226 - - EGF_CA: domain 1 of 37, from 79 to 120: score 55.2, E = 8.3e-12 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< Di+EC ++++C nG +C+N GSYrC+C Gy+++ ++rnC+ mKIAA4226 79 DINECaldpdICANG----ICENlRGSYRCnCNSGYEpdasgRNCI 120 -* mKIAA4226 - - EGF_CA: domain 2 of 37, from 121 to 162: score 60.2, E = 2.6e-13 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DiDEC ++ +C+nG C+N++GSY+C+CppGy ++ + +Ce mKIAA4226 121 DIDEClvnrlLCDNG----LCRNtPGSYSCtCPPGYVfrtetETCE 162 -* mKIAA4226 - - EGF: domain 2 of 37, from 124 to 162: score 37.8, E = 1.4e-06 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC+ ++ C+nG C+++++sy+C+Cp pGy ++++++Ce mKIAA4226 124 ECLvnrlLCDNG------LCRntpgSYSCtCP-PGYVFrteteTCE 162 -* mKIAA4226 - - EGF: domain 3 of 37, from 166 to 202: score 29.6, E = 0.00043 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<-* eC+++pC nG C+++ +s++C+C pG ++++++ C+ mKIAA4226 166 ECEsnPCVNG------ACRnnlgSFHCeCS-PGSKLsstglICI 202 EGF_CA: domain 3 of 37, from 163 to 202: score 47.2, E = 2.2e-09 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<-* D++EC+++pC nG C+N+ GS++C+C pG ++++ C+ mKIAA4226 163 DVNECesnPCVNG----ACRNnLGSFHCeCSPGSKlsstgLICI 202 EGF_CA: domain 4 of 37, from 266 to 307: score 52.3, E = 6.1e-11 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D++EC+ +++C+nG +C+N+ GS++C+Cp+G t ++++r C mKIAA4226 266 DVNECevfpgVCPNG----RCVNsKGSFHCeCPEGLTldgtgRVCL 307 -* mKIAA4226 - - EGF: domain 4 of 37, from 269 to 307: score 30.7, E = 0.0002 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC+ ++ C nG +C+++++s++C+Cp +G t++++++ C mKIAA4226 269 ECEvfpgVCPNG------RCVnskgSFHCeCP-EGLTLdgtgrVCL 307 -* mKIAA4226 - - EGF_CA: domain 5 of 37, from 384 to 425: score 49.6, E = 4.1e-10 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< Di+EC+ ++ C G +C+N++GS++C+C G+ + rnC+ mKIAA4226 384 DINECkafpgMCTYG----KCRNtIGSFKCrCNNGFAldmeeRNCT 425 -* mKIAA4226 - - EGF: domain 5 of 37, from 387 to 425: score 25.6, E = 0.007 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC ++ C G +C+++ +s++C+C +G+ ++ ++++C mKIAA4226 387 ECKafpgMCTYG------KCRntigSFKCrCN-NGFALdmeerNCT 425 -* mKIAA4226 - - [output cut off at A = 10 top alignments] //