hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj58259/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4225  ( 868 res)   mfj58259

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSI      domain found in Plexins, Semaphorins and Int    56.7      3e-12   1
IGc2     Immunoglobulin C-2 Type                         27.3     0.0022   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1     509   561 ..     1    56 []    56.7    3e-12
IGc2       1/1     574   638 ..     1    56 []    27.3   0.0022

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 509 to 561: score 56.7, E = 3e-12
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                       C+++  +sC++C+lardpy C+W +  ++C++++++  ++rg++q+
   mKIAA4225   509    FCEKH--GSCEDCVLARDPY-CAWSPAIKACVTLhQEEASSRGWIQD 552  

                   wssgpssqCp<-*
                   +s  + s+C    
   mKIAA4225   553 MSG-DTSSCL    561  

IGc2: domain 1 of 1, from 574 to 638: score 27.3, E = 0.0022
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik
                      + G++++L+C+   +  + + W++++ +l   +++ +  ++++L i 
   mKIAA4225   574    KHGGTAELKCF-QKSNLARVVWKFqNGELKaaspkygfvGRKHLLIF 619  

                   nvsleDsGlYtCvArNsvg<-*
                   n s +DsG+Y+C+ + +v    
   mKIAA4225   620 NLSDGDSGVYQCLSEERVR    638  

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