hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06290/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4224  ( 568 res)   mbg06290

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RPEL     RPEL repeat                                     78.4    1.5e-19   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RPEL       1/4     103   128 ..     1    26 []    15.0     0.35
RPEL       2/4     411   436 ..     1    26 []    23.8   0.0039
RPEL       3/4     449   473 ..     1    26 []    32.2  1.2e-05
RPEL       4/4     486   511 ..     1    26 []    23.8   0.0041

Alignments of top-scoring domains:
RPEL: domain 1 of 4, from 103 to 128: score 15.0, E = 0.35
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                        L+ K   R++reEL++++ L+  e   
   mKIAA4224   103    SALEKKMAGRQGREELIKQGLLEMME    128  

RPEL: domain 2 of 4, from 411 to 436: score 23.8, E = 0.0039
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                       lLa KL +RP++ ELe+rnI  ++    
   mKIAA4224   411    ELLAVKLRNRPSKQELEDRNIFPRRT    436  

RPEL: domain 3 of 4, from 449 to 473: score 32.2, E = 1.2e-05
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                       +L +KLSqRP +eELerrnILk+++   
   mKIAA4224   449    MKL-SKLSQRPAVEELERRNILKQRN    473  

RPEL: domain 4 of 4, from 486 to 511: score 23.8, E = 0.0041
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                       +L rKL qRPt+ EL +r IL + +   
   mKIAA4224   486    QRLTRKLNQRPTVDELRDRKILIRFS    511  

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