hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mkg/mkg04188/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4222  ( 543 res)   mkg04188

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    106.1    3.9e-27   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/8     245   267 ..     1    23 []    31.5  0.00012
ZnF_C2H2   2/8     273   295 ..     1    23 []    29.0  0.00067
ZnF_C2H2   3/8     301   330 ..     1    23 []     1.6  2.1e+02
ZnF_C2H2   4/8     336   358 ..     1    23 []    24.4    0.015
ZnF_C2H2   5/8     363   385 ..     1    23 []    15.2        6
ZnF_C2H2   6/8     413   435 ..     1    23 []    25.4   0.0082
ZnF_C2H2   7/8     441   463 ..     1    23 []    20.6     0.22
ZnF_C2H2   8/8     497   519 ..     1    23 []     4.6       96

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 8, from 245 to 267: score 31.5, E = 0.00012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk+f++++aL+rH+r+H   
   mKIAA4222   245    YKCDT-CGKTFHQAsALTRHQRIH    267  

ZnF_C2H2: domain 2 of 8, from 273 to 295: score 29.0, E = 0.00067
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C ksfs+ ++L rH r+H   
   mKIAA4222   273    YKCKE-CEKSFSQSsSLSRHKRIH    295  

ZnF_C2H2: domain 3 of 8, from 301 to 330: score 1.6, E = 2.1e+02
                   *->ykCpi.g..Cg...ksfssk.aLkrHmrvH<-*
                      ykC+ ++++C+ ++ks+s+ ++  +H + H   
   mKIAA4222   301    YKCEAsDksCDapdKSCSQSsDVLQHKKGH    330  

ZnF_C2H2: domain 4 of 8, from 336 to 358: score 24.4, E = 0.015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC   C ++fs+  +L++H+r+H   
   mKIAA4222   336    YKCGT-CERVFSRSvHLTQHQRTH    358  

ZnF_C2H2: domain 5 of 8, from 363 to 385: score 15.2, E = 6
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       kC++ Cg  f++ + L++H+r H   
   mKIAA4222   363    CKCTV-CGSDFCHTsYLVEHQRLH    385  

ZnF_C2H2: domain 6 of 8, from 413 to 435: score 25.4, E = 0.0082
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+  ++L++H+r+H   
   mKIAA4222   413    YSCNE-CGKDFRLNsHLIQHQRIH    435  

ZnF_C2H2: domain 7 of 8, from 441 to 463: score 20.6, E = 0.22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgksfs+ + L++H ++H   
   mKIAA4222   441    HECNE-CGKSFSQTsCLIQHHKMH    463  

ZnF_C2H2: domain 8 of 8, from 497 to 519: score 4.6, E = 96
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+    + fs++ +L++H rvH   
   mKIAA4222   497    FDCDA-WEENFSQRaHLIQHERVH    519  

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