hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mkg/mkg04188/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4222  ( 543 res)   mkg04188

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         150.7    2.5e-41   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/8     245   267 ..     1    24 []    35.1  1.6e-06
zf-C2H2    2/8     273   295 ..     1    24 []    35.4  1.3e-06
zf-C2H2    3/8     301   330 ..     1    24 []     8.4       15
zf-C2H2    4/8     336   358 ..     1    24 []    32.2  1.2e-05
zf-C2H2    5/8     363   385 ..     1    24 []    18.6     0.15
zf-C2H2    6/8     413   435 ..     1    24 []    33.0    7e-06
zf-C2H2    7/8     441   463 ..     1    24 []    25.9  0.00096
zf-C2H2    8/8     497   519 ..     1    24 []     8.7       14

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 8, from 245 to 267: score 35.1, E = 1.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  Cgk+F + s L+rH+r+H   
   mKIAA4222   245    YKCD-TCGKTFHQASALTRHQRIH    267  

zf-C2H2: domain 2 of 8, from 273 to 295: score 35.4, E = 1.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C ksFs++s+L rH+r+H   
   mKIAA4222   273    YKCK-ECEKSFSQSSSLSRHKRIH    295  

zf-C2H2: domain 3 of 8, from 301 to 330: score 8.4, E = 15
                   *->ykCpf...dCg...ksFsrksnLkrHlrtH<-*
                      ykC+ +++ C+ ++ks+s++s+  +H++ H   
   mKIAA4222   301    YKCEAsdkSCDapdKSCSQSSDVLQHKKGH    330  

zf-C2H2: domain 4 of 8, from 336 to 358: score 32.2, E = 1.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC   C ++Fsr+ +L++H+rtH   
   mKIAA4222   336    YKCG-TCERVFSRSVHLTQHQRTH    358  

zf-C2H2: domain 5 of 8, from 363 to 385: score 18.6, E = 0.15
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cg  F++ s L  H+r H   
   mKIAA4222   363    CKCT-VCGSDFCHTSYLVEHQRLH    385  

zf-C2H2: domain 6 of 8, from 413 to 435: score 33.0, E = 7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk F+ +s+L +H+r+H   
   mKIAA4222   413    YSCN-ECGKDFRLNSHLIQHQRIH    435  

zf-C2H2: domain 7 of 8, from 441 to 463: score 25.9, E = 0.00096
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +CgksFs+ s L +H ++H   
   mKIAA4222   441    HECN-ECGKSFSQTSCLIQHHKMH    463  

zf-C2H2: domain 8 of 8, from 497 to 519: score 8.7, E = 14
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+    + Fs++++L +H r+H   
   mKIAA4222   497    FDCD-AWEENFSQRAHLIQHERVH    519  

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