hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01865/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4221  ( 649 res)   mph01865

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       110.0    2.6e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1     114   211 ..     1   114 []   110.0  2.6e-28

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 114 to 211: score 110.0, E = 2.6e-28
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+lv+g+         ++++a  H++vL++    S+yF a+f+++
   mKIAA4221   114    CDVILVAGD---------RRIPA--HRLVLSSV---SDYFAAMFTNd 146  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++ ++++i +++      v p ++  l+++ Yt++l+l+e+   n+e l
   mKIAA4221   147 vrearqeeIKMEG------VEPNSLWSLIQYAYTgRLELKED---NIECL 187  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L +A +l    q+ ++ve+C++fl k+l   
   mKIAA4221   188 LSTACLL----QLSqVVEACCKFLMKQL    211  

//