hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph01865/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4221 ( 649 res) mph01865 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 345.3 6.8e-100 6 BACK BTB And C-terminal Kelch 175.9 6.6e-49 1 Kelch_2 Kelch motif 148.9 9.2e-41 6 BTB BTB/POZ domain 126.8 4e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 104 211 .. 1 135 [] 126.8 4e-34 BACK 1/1 216 317 .. 1 103 [] 175.9 6.6e-49 Kelch_1 1/6 351 395 .. 1 45 [] 27.0 0.00044 Kelch_2 1/6 346 395 .. 1 54 [] 4.6 62 Kelch_1 2/6 397 442 .. 1 45 [] 75.6 1e-18 Kelch_2 2/6 397 442 .. 1 54 [] 39.2 9.1e-08 Kelch_1 3/6 444 489 .. 1 45 [] 58.0 2.1e-13 Kelch_2 3/6 444 489 .. 1 54 [] 20.4 0.044 Kelch_1 4/6 491 536 .. 1 45 [] 71.0 2.5e-17 Kelch_2 4/6 491 536 .. 1 54 [] 31.9 1.5e-05 Kelch_1 5/6 538 589 .. 1 45 [] 61.1 2.4e-14 Kelch_2 5/6 538 589 .. 1 54 [] 23.9 0.0037 Kelch_1 6/6 591 636 .. 1 45 [] 63.4 5e-15 Kelch_2 6/6 591 636 .. 1 54 [] 35.5 1.2e-06 Alignments of top-scoring domains: BTB: domain 1 of 1, from 104 to 211: score 126.8, E = 4e-34 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++ +++++lcDV+Lv+gd ++++AH++vL++ S+YF a+ mKIAA4221 104 MENYLRHKQLCDVILVAGD--------RRIPAHRLVLSSVSDYFAAM 142 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ e ++ ei +e+v+p ++ l++++Ytg+l+++ mKIAA4221 143 FTND------VREARQE-EIKMEGVEPNSLWSLIQYAYTGRLELK----- 180 PssckseenvedlLalAadllqipslvdkCeefliksl<-* e+n+e lL++A +llq+ +v++C++fl k+l mKIAA4221 181 ------EDNIECLLSTA-CLLQLSQVVEACCKFLMKQL 211 BACK: domain 1 of 1, from 216 to 317: score 175.9, E = 6.6e-49 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr+fAda+gc++L+++A+++++++F+eV++++EF L+++++ + mKIAA4221 216 CLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAK 262 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL+sD+ n+p+Ee++++A++ Wv+hd+e+R+k+l++LL+++RLpLL p++ mKIAA4221 263 LLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSRLLAYIRLPLLAPQF 312 Llevve<-* L + +e mKIAA4221 313 LAD-ME 317 Kelch_1: domain 1 of 6, from 351 to 395: score 27.0, E = 0.00044 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR+ ++ g ++++GG+d+++ s+e+YD++tn Wt++++m+ mKIAA4221 351 PRTKPRKSTV-GTLFAVGGMDStKGATSIEKYDLRTNMWTPVANMN 395 -* mKIAA4221 - - Kelch_2: domain 1 of 6, from 346 to 395: score 4.6, E = 62 *->pryphasvvp....ggklyvvGGsfkgnrgtgngdesssdllvldpe p+ ++ + p++++ g l+ vGG+ + ++ s+ +d++ mKIAA4221 346 PMLQSPRTKPrkstVGTLFAVGGM------DSTKGATSIEK--YDLR 384 tnvWeklpalp<-* tn W++++ + mKIAA4221 385 TNMWTPVANMN 395 Kelch_1: domain 2 of 6, from 397 to 442: score 75.6, E = 1e-18 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R +gv+vld+k+Yv+GG+dg + ln+ve+Y+p+t+tW+ +p+m+ mKIAA4221 397 RRLQFGVAVLDDKLYVVGGRDGlKTLNTVECYNPKTKTWSVMPPMS 442 -* mKIAA4221 - - Kelch_2: domain 2 of 6, from 397 to 442: score 39.2, E = 9.1e-08 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++v+++klyvvGG+ +g ++++ +++p+t++W mKIAA4221 397 RRLQFGVAVLDDKLYVVGGR--------DGLKTLNTVECYNPKTKTW 435 eklpalp<-* + +p++ mKIAA4221 436 SVMPPMS 442 Kelch_1: domain 3 of 6, from 444 to 489: score 58.0, E = 2.1e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv+vl+g +Y++GG+dg ++ln+ve++Dp +W ++++m+ mKIAA4221 444 HRHGLGVAVLEGPMYAVGGHDGwSYLNTVERWDPQARQWNFVATMS 489 -* mKIAA4221 - - Kelch_2: domain 3 of 6, from 444 to 489: score 20.4, E = 0.044 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v++g +y vGG+ +g ++++++ ++dp+ ++W mKIAA4221 444 HRHGLGVAVLEGPMYAVGGH--------DGWSYLNTVERWDPQARQW 482 eklpalp<-* ++ + mKIAA4221 483 NFVATMS 489 Kelch_1: domain 4 of 6, from 491 to 536: score 71.0, E = 2.5e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs +gv+vl gk+Y++GG+dg+++l+sve++Dp tn+Wt ++ m+ mKIAA4221 491 PRSTVGVAVLSGKLYAVGGRDGsSCLKSVECFDPHTNKWTLCAQMS 536 -* mKIAA4221 - - Kelch_2: domain 4 of 6, from 491 to 536: score 31.9, E = 1.5e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+ + ++v+ gkly vGG+ +g++ + ++ ++dp tn+W mKIAA4221 491 PRSTVGVAVLSGKLYAVGGR--------DGSSCLKSVECFDPHTNKW 529 eklpalp<-* + ++++ mKIAA4221 530 TLCAQMS 536 Kelch_1: domain 5 of 6, from 538 to 589: score 61.1, E = 2.4e-14 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk +R g+gv++ +g++Y+iGG+d ++++ +++ +++ve+YDp+t+ Wt mKIAA4221 538 RRGGVGVTTWNGLLYAIGGHDAptsnltsRLSDCVERYDPKTDVWTA 584 lpsmp<-* ++sm+ mKIAA4221 585 VASMS 589 Kelch_2: domain 5 of 6, from 538 to 589: score 23.9, E = 0.0037 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ +++++g ly +GG+ + + + + +s+ + ++dp+t vW mKIAA4221 538 RRGGVGVTTWNGLLYAIGGH--DAPTSNLTSRLSDCVERYDPKTDVW 582 eklpalp<-* + ++++ mKIAA4221 583 TAVASMS 589 Kelch_1: domain 6 of 6, from 591 to 636: score 63.4, E = 5e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< R +gv+ l++k+Y++GGydg+++ln ve+YDp tn+Wt+++++ mKIAA4221 591 SRDAVGVCLLGDKLYAVGGYDGqTYLNIVEAYDPQTNEWTQVAPLC 636 -* mKIAA4221 - - Kelch_2: domain 6 of 6, from 591 to 636: score 35.5, E = 1.2e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++++g+kly vGG+ +g +++ + +dp+tn+W mKIAA4221 591 SRDAVGVCLLGDKLYAVGGY--------DGQTYLNIVEAYDPQTNEW 629 eklpalp<-* + +++l+ mKIAA4221 630 TQVAPLC 636 //