hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg04678/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4219 ( 918 res) mbg04678 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Spectrin Spectrin repeat 460.5 1.4e-134 6 PH PH domain 71.8 1.4e-17 1 Fez1 Fez1 -96.8 0.71 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Spectrin 1/6 67 171 .. 1 108 [] 72.7 7.9e-18 Spectrin 2/6 173 277 .. 1 108 [] 92.1 1.1e-23 Fez1 1/1 135 330 .. 1 220 [] -96.8 0.71 Spectrin 3/6 279 384 .. 1 108 [] 115.3 1.2e-30 Spectrin 4/6 386 490 .. 1 108 [] 79.1 9e-20 Spectrin 5/6 492 596 .. 1 108 [] 99.5 6.5e-26 Spectrin 6/6 598 707 .. 1 108 [] 36.5 6.1e-07 PH 1/1 769 878 .. 1 92 [] 71.8 1.4e-17 Alignments of top-scoring domains: Spectrin: domain 1 of 6, from 67 to 171: score 72.7, E = 7.9e-18 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe + q rd++++ +W +e +l++s dyg l+ vq +kk ++++ mKIAA4219 67 KAKLQISRDLEDETLWVEERLPLAQSADYGTNLQTVQLFMKKNQTLQ 113 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+ +h +rv+++ +q+L+ + d +i+erl +L + W+ L+e mKIAA4219 114 NEILGHA-PRVEDVLRRGQELVKAA--EIDCQDIEERLGHLQSSWDTLRE 160 laaeRkqkLee<-* +aa R q+L++ mKIAA4219 161 AAAGRLQRLRD 171 Spectrin: domain 2 of 6, from 173 to 277: score 92.1, E = 1.1e-23 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++ qq++ da e+e+Wise+e ++ s++++kD+e++ +lk+H + + mKIAA4219 173 HEAQQYYLDAGEAEAWISEQELYVFSDEPPKDEEGAIVMLKRHLRQQ 219 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle + ++ ++ +++ql aq+L+++g hp+ e+i + +++++++ L++ mKIAA4219 220 RTVEEYG-RNIKQLAGRAQSLLSAG--HPEGEQIIRLQGQVDKQYAGLKD 266 laaeRkqkLee<-* +a+eR+++Le+ mKIAA4219 267 MAEERRRRLEN 277 Fez1: domain 1 of 1, from 135 to 330: score -96.8, E = 0.71 *->TkWEVCQKsGEISLLKQQLKESQAEVnQKaSEilaLraqLrdtRAqL K++EI + Q ++ +++ + + Lr++ A mKIAA4219 135 -------KAAEI--------DCQ-DIEERLGHLQSSWDTLREAAA-- 163 rekEerllgLrdAlrtKeLELEvCEgELqRklqEaaltPvDLvElrEkvg +rl++LrdA + + L + E E +E++l v E + mKIAA4219 164 ----GRLQRLRDAHEAQQYYLDAGEAE--AWISEQEL----YVFSDEPPK 203 slEadeaklReqadaaaaadv....RmRqDAqGrPelllesdeAkvdqeG +E l++ ++ ++ v++ +R + Gr ll A mKIAA4219 204 DEEGAIVMLKRH--LRQQRTVeeygRNIKQLAGRAQSLL---SA------ 242 eGgteAq.lreLRrelERLRAEL...reERqrr.erQalsFeqERlv... G e +++ L+ ++++ A L++ +eER+rr e + F+ R +++ mKIAA4219 243 -GHPEGEqIIRLQGQVDKQYAGLkdmAEERRRRlENMYHLFQLKREAddl 291 ..WqeEKEkVirYQkQLQl.SYveMYq.RNQaLEkeLqq<-* ++W EKE V Q Q v M++++ + +e mKIAA4219 292 eqWITEKEMVASSQEMGQDfDHVTMLRdKFRDFARETGA 330 Spectrin: domain 3 of 6, from 279 to 384: score 115.3, E = 1.2e-30 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++l+q+ r+ad+le+Wi+eke +ss+++g+D ++v L +k+++f mKIAA4219 279 YHLFQLKREADDLEQWITEKEMVASSQEMGQDFDHVTMLRDKFRDFA 325 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e a++q+rvd++n + ++Li++g h ++ i e++++Ln+ W++Lle mKIAA4219 326 RETGAIGQERVDNVNTIIERLIDAG--HSEAATIAEWKDGLNDMWADLLE 373 laaeRkqkLee<-* l+++R q+L + mKIAA4219 374 LIDTRMQLLAA 384 Spectrin: domain 4 of 6, from 386 to 490: score 79.1, E = 9e-20 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++l+++++ e++ i+ek+++l ++ D + +++ ++ H afe mKIAA4219 386 YDLHRYFYTGTEILGLIDEKHRELPEDVGL-DASTAESFHRVHTAFE 431 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +el+ ++ +v+q ++ a +L+++++ ++ +++i+++ +e+ ++W+aLl+ mKIAA4219 432 RELHLLG-VQVQQFQDVATRLQTAYA-GEKADAIQSKEQEVSAAWQALLD 479 laaeRkqkLee<-* ++a R+++L + mKIAA4219 480 ACAGRRAQLVD 490 Spectrin: domain 5 of 6, from 492 to 596: score 99.5, E = 6.5e-26 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe + ++F+ +++l+sW++ + ++++ ++ ++D++sv+ Llk H++++ mKIAA4219 492 ADKFRFFSMVRDLLSWMESIIRQIETQERPRDVSSVELLLKYHQGIK 538 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle ae++++ +++++ el+++L++++ h++s+ei+e+l+++ +r++++ + mKIAA4219 539 AEINTRA-KNFSTCLELGESLLQRQ--HQASDEIREKLQQVISRRQEMND 585 laaeRkqkLee<-* ++++R +L+ mKIAA4219 586 KWEARSDRLHM 596 Spectrin: domain 6 of 6, from 598 to 707: score 36.5, E = 6.1e-07 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l+ qF rda+ +e+W+ +e++l+s+d+g++++sv++L+k+Heafe mKIAA4219 598 LEVCQFSRDASVAEAWLIAQEPYLASRDFGHTVDSVEKLIKRHEAFE 644 aelaahqqdrvdqlne.laqkLieeged..hpdseeikerleeLnerWea + a + +r+ +l++++ +L+e+++++++ +++ +e e + mKIAA4219 645 KSTASWA-ERFAALEKpTTLELKERQTPerPTEEPGPQEEEGETAGEAPQ 693 LlelaaeRkqkLee<-* ++ +a eR ee mKIAA4219 694 VHHAATERTSPGEE 707 PH: domain 1 of 1, from 769 to 878: score 71.8, E = 1.4e-17 *->vikeGwLlkkg.........gkkswkkRyfvLfndvLlyykdkk... v +eG+L +k++ ++++++ +++sw y+vL+n++L +ykd k+ mKIAA4219 769 VQMEGYLGRKHdlegpnkkaSNRSWNNLYCVLRNSQLTFYKDAKnla 815 ....kkpkgsipLsgiqvekvpdn.krkncFeirt.dretlllqaeseee + ++ + L+++ +e++++++k+k++F++r +++ ++l++ ++eee mKIAA4219 816 lgvpYHGEEPLALRHAICEIAVNYkKKKHVFKLRLsNGSEWLFHGKDEEE 865 rkeWvkaiqsair<-* + W+++ + ai mKIAA4219 866 MLMWLQSMSTAIN 878 //