hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm12334/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4218 ( 601 res) mpm12334 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 224.5 9.4e-63 11 KRAB krueppel associated box 123.5 2.3e-32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 55 115 .. 1 62 [] 123.5 2.3e-32 ZnF_C2H2 1/11 259 281 .. 1 23 [] 24.7 0.013 ZnF_C2H2 2/11 287 309 .. 1 23 [] 32.0 8.3e-05 ZnF_C2H2 3/11 315 337 .. 1 23 [] 29.7 0.0004 ZnF_C2H2 4/11 343 365 .. 1 23 [] 24.3 0.017 ZnF_C2H2 5/11 371 393 .. 1 23 [] 22.9 0.043 ZnF_C2H2 6/11 399 421 .. 1 23 [] 24.9 0.011 ZnF_C2H2 7/11 427 449 .. 1 23 [] 23.8 0.024 ZnF_C2H2 8/11 455 477 .. 1 23 [] 31.3 0.00013 ZnF_C2H2 9/11 483 505 .. 1 23 [] 27.4 0.002 ZnF_C2H2 10/11 511 533 .. 1 23 [] 28.1 0.0012 ZnF_C2H2 11/11 539 561 .. 1 23 [] 25.4 0.0078 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 55 to 115: score 123.5, E = 2.3e-32 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF+DVAV+Fsq+EW +LDpaQr LYR+VMlENYsnL+SLG fq s mKIAA4218 55 VTFRDVAVSFSQDEWLHLDPAQRSLYREVMLENYSNLASLG-FQASI 100 pdliskLEqgeEpwi<-* p +i kL++g+ p++ mKIAA4218 101 PPVIGKLQKGQDPCM 115 ZnF_C2H2: domain 1 of 11, from 259 to 281: score 24.7, E = 0.013 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f++ +L +H r H mKIAA4218 259 HVCSE-CGKGFTQSlHLLEHKRLH 281 ZnF_C2H2: domain 2 of 11, from 287 to 309: score 32.0, E = 8.3e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksfs++++L H+r+H mKIAA4218 287 YKCSE-CGKSFSHRsSLLAHQRTH 309 ZnF_C2H2: domain 3 of 11, from 315 to 337: score 29.7, E = 0.0004 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k f s + L++H+rvH mKIAA4218 315 YKCSE-CEKAFGSSsTLIKHLRVH 337 ZnF_C2H2: domain 4 of 11, from 343 to 365: score 24.3, E = 0.017 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk fs+ + L+ H+r+H mKIAA4218 343 YRCRQ-CGKAFSQCsTLTVHQRIH 365 ZnF_C2H2: domain 5 of 11, from 371 to 393: score 22.9, E = 0.043 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + C+k f+ + L rH+r+H mKIAA4218 371 YKCAE-CDKAFNCRaKLHRHQRIH 393 ZnF_C2H2: domain 6 of 11, from 399 to 421: score 24.9, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgk +s+ ++L +H+r H mKIAA4218 399 YKCAE-CGKGYSQFpSLAEHQRLH 421 ZnF_C2H2: domain 7 of 11, from 427 to 449: score 23.8, E = 0.024 *->ykCpigCgksfssk.aLkrHmrvH<-* +C + Cg++f++ + L++H+r+H mKIAA4218 427 CQCLQ-CGRTFTRVsTLIEHQRIH 449 ZnF_C2H2: domain 8 of 11, from 455 to 477: score 31.3, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f++++++++H ++H mKIAA4218 455 YQCNE-CGKTFNQYsSFNEHRKIH 477 ZnF_C2H2: domain 9 of 11, from 483 to 505: score 27.4, E = 0.002 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f k++L rH+r+H mKIAA4218 483 YTCEE-CGKAFGCKsNLYRHQRIH 505 [output cut off at A = 10 top alignments] //