hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12334/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4218  ( 601 res)   mpm12334

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         265.9    5.5e-76  11
KRAB     KRAB box                                       101.3    1.8e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      55    95 ..     1    41 []   101.3  1.8e-26
zf-C2H2    1/11    259   281 ..     1    24 []    26.6  0.00058
zf-C2H2    2/11    287   309 ..     1    24 []    39.1  9.7e-08
zf-C2H2    3/11    315   337 ..     1    24 []    33.7  4.2e-06
zf-C2H2    4/11    343   365 ..     1    24 []    33.5  4.8e-06
zf-C2H2    5/11    371   393 ..     1    24 []    24.3   0.0029
zf-C2H2    6/11    399   421 ..     1    24 []    27.3  0.00037
zf-C2H2    7/11    427   449 ..     1    24 []    29.2  9.8e-05
zf-C2H2    8/11    455   477 ..     1    24 []    32.6  9.1e-06
zf-C2H2    9/11    483   505 ..     1    24 []    30.0  5.7e-05
zf-C2H2   10/11    511   533 ..     1    24 []    31.3  2.2e-05
zf-C2H2   11/11    539   561 ..     1    24 []    30.4  4.1e-05

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 55 to 95: score 101.3, E = 1.8e-26
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      VtF+DVAV+F+q+EW +LdpaQr+LYr+VMlENy+nL+Slg   
   mKIAA4218    55    VTFRDVAVSFSQDEWLHLDPAQRSLYREVMLENYSNLASLG    95   

zf-C2H2: domain 1 of 11, from 259 to 281: score 26.6, E = 0.00058
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk F+++ +L  H+r H   
   mKIAA4218   259    HVCS-ECGKGFTQSLHLLEHKRLH    281  

zf-C2H2: domain 2 of 11, from 287 to 309: score 39.1, E = 9.7e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +CgksFs++s+L +H+rtH   
   mKIAA4218   287    YKCS-ECGKSFSHRSSLLAHQRTH    309  

zf-C2H2: domain 3 of 11, from 315 to 337: score 33.7, E = 4.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C k+F ++s+L +Hlr+H   
   mKIAA4218   315    YKCS-ECEKAFGSSSTLIKHLRVH    337  

zf-C2H2: domain 4 of 11, from 343 to 365: score 33.5, E = 4.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cgk+Fs+ s+L+ H+r+H   
   mKIAA4218   343    YRCR-QCGKAFSQCSTLTVHQRIH    365  

zf-C2H2: domain 5 of 11, from 371 to 393: score 24.3, E = 0.0029
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +C+k+F+ ++ L+rH+r+H   
   mKIAA4218   371    YKCA-ECDKAFNCRAKLHRHQRIH    393  

zf-C2H2: domain 6 of 11, from 399 to 421: score 27.3, E = 0.00037
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +Cgk +s+  +L  H+r H   
   mKIAA4218   399    YKCA-ECGKGYSQFPSLAEHQRLH    421  

zf-C2H2: domain 7 of 11, from 427 to 449: score 29.2, E = 9.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +Cg++F+r s+L  H+r+H   
   mKIAA4218   427    CQCL-QCGRTFTRVSTLIEHQRIH    449  

zf-C2H2: domain 8 of 11, from 455 to 477: score 32.6, E = 9.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F++ s+++ H+++H   
   mKIAA4218   455    YQCN-ECGKTFNQYSSFNEHRKIH    477  

zf-C2H2: domain 9 of 11, from 483 to 505: score 30.0, E = 5.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F  ksnL rH+r+H   
   mKIAA4218   483    YTCE-ECGKAFGCKSNLYRHQRIH    505  

zf-C2H2: domain 10 of 11, from 511 to 533: score 31.3, E = 2.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs+ s L+ H r+H   
   mKIAA4218   511    YQCN-QCGKAFSQYSFLTEHERIH    533  

zf-C2H2: domain 11 of 11, from 539 to 561: score 30.4, E = 4.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +Cgk++s +snL rH+++H   
   mKIAA4218   539    YKCM-ECGKAYSYRSNLCRHKKVH    561  

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