hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file: /cdna4/rodent/full/goal/mpm/mpm12334/w3open/interpro/cnk_1/seq.in
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Query: mKIAA4218 ( 601 res) mpm12334
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C2H2 Zinc finger, C2H2 type 265.9 5.5e-76 11
KRAB KRAB box 101.3 1.8e-26 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
KRAB 1/1 55 95 .. 1 41 [] 101.3 1.8e-26
zf-C2H2 1/11 259 281 .. 1 24 [] 26.6 0.00058
zf-C2H2 2/11 287 309 .. 1 24 [] 39.1 9.7e-08
zf-C2H2 3/11 315 337 .. 1 24 [] 33.7 4.2e-06
zf-C2H2 4/11 343 365 .. 1 24 [] 33.5 4.8e-06
zf-C2H2 5/11 371 393 .. 1 24 [] 24.3 0.0029
zf-C2H2 6/11 399 421 .. 1 24 [] 27.3 0.00037
zf-C2H2 7/11 427 449 .. 1 24 [] 29.2 9.8e-05
zf-C2H2 8/11 455 477 .. 1 24 [] 32.6 9.1e-06
zf-C2H2 9/11 483 505 .. 1 24 [] 30.0 5.7e-05
zf-C2H2 10/11 511 533 .. 1 24 [] 31.3 2.2e-05
zf-C2H2 11/11 539 561 .. 1 24 [] 30.4 4.1e-05
Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 55 to 95: score 101.3, E = 1.8e-26
*->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
VtF+DVAV+F+q+EW +LdpaQr+LYr+VMlENy+nL+Slg
mKIAA4218 55 VTFRDVAVSFSQDEWLHLDPAQRSLYREVMLENYSNLASLG 95
zf-C2H2: domain 1 of 11, from 259 to 281: score 26.6, E = 0.00058
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C+ +Cgk F+++ +L H+r H
mKIAA4218 259 HVCS-ECGKGFTQSLHLLEHKRLH 281
zf-C2H2: domain 2 of 11, from 287 to 309: score 39.1, E = 9.7e-08
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +CgksFs++s+L +H+rtH
mKIAA4218 287 YKCS-ECGKSFSHRSSLLAHQRTH 309
zf-C2H2: domain 3 of 11, from 315 to 337: score 33.7, E = 4.2e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +C k+F ++s+L +Hlr+H
mKIAA4218 315 YKCS-ECEKAFGSSSTLIKHLRVH 337
zf-C2H2: domain 4 of 11, from 343 to 365: score 33.5, E = 4.8e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C +Cgk+Fs+ s+L+ H+r+H
mKIAA4218 343 YRCR-QCGKAFSQCSTLTVHQRIH 365
zf-C2H2: domain 5 of 11, from 371 to 393: score 24.3, E = 0.0029
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC +C+k+F+ ++ L+rH+r+H
mKIAA4218 371 YKCA-ECDKAFNCRAKLHRHQRIH 393
zf-C2H2: domain 6 of 11, from 399 to 421: score 27.3, E = 0.00037
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC +Cgk +s+ +L H+r H
mKIAA4218 399 YKCA-ECGKGYSQFPSLAEHQRLH 421
zf-C2H2: domain 7 of 11, from 427 to 449: score 29.2, E = 9.8e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C +Cg++F+r s+L H+r+H
mKIAA4218 427 CQCL-QCGRTFTRVSTLIEHQRIH 449
zf-C2H2: domain 8 of 11, from 455 to 477: score 32.6, E = 9.1e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+F++ s+++ H+++H
mKIAA4218 455 YQCN-ECGKTFNQYSSFNEHRKIH 477
zf-C2H2: domain 9 of 11, from 483 to 505: score 30.0, E = 5.7e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+F ksnL rH+r+H
mKIAA4218 483 YTCE-ECGKAFGCKSNLYRHQRIH 505
zf-C2H2: domain 10 of 11, from 511 to 533: score 31.3, E = 2.2e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+Fs+ s L+ H r+H
mKIAA4218 511 YQCN-QCGKAFSQYSFLTEHERIH 533
zf-C2H2: domain 11 of 11, from 539 to 561: score 30.4, E = 4.1e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC +Cgk++s +snL rH+++H
mKIAA4218 539 YKCM-ECGKAYSYRSNLCRHKKVH 561
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