hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03361/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4217  ( 310 res)   mbh03361

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VWA      von Willebrand factor (vWF) type A domain       48.7    7.8e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWA        1/1      54   252 ..     1   193 []    48.7  7.8e-10

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 54 to 252: score 48.7, E = 7.8e-10
                   *->plDvvfllDgSgSmg...............gnrfekvkefv.klveq
                      +l++++ +D ++S g++ ++++ +  ++ + + +  ++++v++++++
   mKIAA4217    54    QLNFTVAIDFTASNGnplqptslhymspyqLSAYAMALKAVgEIIQD 100  

                   ld.gdrvglvqFss......dvrvefpln.......sqskdallealasl
                    d++  + +++F+ + +++++  + fpln++++++++   + +le   + 
   mKIAA4217   101 YDsDKLFPAYGFGAklppegRISHQFPLNnndedpnCAGIEGVLESYFQS 150  

                   sykglkdyslgggTnlg.ALqyalenlfsesag.rrgagratkiSnvpkv
                    +    + +l+g+T++++ ++ +++ + + s g+++             v
   mKIAA4217   151 LR----TVQLYGPTYFApVINQVARAAAKISDGsQY------------YV 184  

                   liliTDGesndggddpedileaakelkrsgvkvfvigvgnade.elkeia
                   l++iTDG  +    d  +++ea+  + +   +++++gvg+a ++ ++e++
   mKIAA4217   185 LLIITDGVIS----DMTQTKEAIVSASSLPMSIIIVGVGPAMFeAMEELD 230  

                   sep.gehvffdvsdvedlpslldllidlll<-*
                   +++ ++  +         + + +++++++    
   mKIAA4217   231 GDDvRVSSR--------GRYAERDIVQFVP    252  

//