hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03361/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4217  ( 310 res)   mbh03361

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Copine   Copine                                         322.3    5.6e-93   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Copine     1/1      75   219 ..     1   160 []   322.3  5.6e-93

Alignments of top-scoring domains:
Copine: domain 1 of 1, from 75 to 219: score 322.3, E = 5.6e-93
                   *->SLHyIspyqpNpYeqAiravGeiLqdYDsDklfpayGFGAkiPpdys
                      SLHy+spyq+++Y +A+ avGei+qdYDsDklfpayGFGAk+Pp+++
   mKIAA4217    75    SLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGR 121  

                   vshdedvFpLnfnpedpeCnGieGVleaYrealpnvqLsGPTnFaPiIna
                   +sh+   FpLn n+edp+C GieGVle+Y ++l++vqL+GPT FaP+In+
   mKIAA4217   122 ISHQ---FPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQ 168  

                   aariAeassaqeggqYhVLlIiTDGqvtRsvDteGLSpDmkeTvdAIVsA
                   +ar A++  + +g+qY+VLlIiTDG+++          Dm +T++AIVsA
   mKIAA4217   169 VARAAAK--ISDGSQYYVLLIITDGVIS----------DMTQTKEAIVSA 206  

                   SklPLSIiiVGVG<-*
                   S+lP+SIiiVGVG   
   mKIAA4217   207 SSLPMSIIIVGVG    219  

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