hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj70377/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4216  ( 906 res)   mfj70377

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HECTc    Domain Homologous to E6-AP Carboxyl Terminus   612.6   1.4e-179   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HECTc      1/1     576   906 .]     1   407 []   612.6 1.4e-179

Alignments of top-scoring domains:
HECTc: domain 1 of 1, from 576 to 906: score 612.6, E = 1.4e-179
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                      +++p dLkk+    L++ef      +gE+g+D+GGv++EFf+l++ e
   mKIAA4216   576    MENPADLKKQ----LYVEF------EGEQGVDEGGVSKEFFQLVVEE 612  

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                   +fnp d g+F+y++ ++              l+++nPs++++++      
   mKIAA4216   613 IFNP-DIGMFTYDEATK--------------LFWFNPSSFETEG------ 641  

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                   +F +iG+vlG+A+y+n++lD++F++++y+kL+gk+     t+ Dl++++P
   mKIAA4216   642 QFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKK----GTFRDLGDSHP 687  

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                   +ly+sL+ L                   le++++ + +dm++tF+i+++ 
   mKIAA4216   688 VLYQSLKDL-------------------LEYEGSVE-DDMMITFQISQTD 717  

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                   +fg+ ++++Lk++G++ip+T+eN+kE+V+l+++y+lnk+vekq++AFr+G
   mKIAA4216   718 LFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRG 767  

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   F++V +e+ L+ylF++eE+eLLicG++ ++d++ L+++Tey+ggYt++s 
   mKIAA4216   768 FHMVTNESPLKYLFRPEEIELLICGSR-NLDFQALEETTEYDGGYTRESV 816  

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq
                   +i   + FWe+v+sFt+e++r++LqF+TG++r+P  vgG+ +L       
   mKIAA4216   817 VI---REFWEIVHSFTDEQKRLFLQFTTGTDRAP--VGGLGKL------- 854  

                   kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg
                   k++I k+g+    d++rLPt+hTCfN L LP+YsSke+L+e+LL AI + 
   mKIAA4216   855 KMIIAKNGP----DTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITY- 899  

                   RiggeGFgls<-*
                      ++GFg++   
   mKIAA4216   900 ---AKGFGML    906  

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