hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj70377/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4216  ( 906 res)   mfj70377

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HECT     HECT-domain (ubiquitin-transferase)            537.7   8.2e-158   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HECT       1/1     607   906 .]     1   366 []   537.7 8.2e-158

Alignments of top-scoring domains:
HECT: domain 1 of 1, from 607 to 906: score 537.7, E = 8.2e-158
                   *->tLlsrelfnPdygLFeysdnseakseeddsysgyvedsytlfpnPls
                      +L++ e+fnPd g+F+y                 +e+++ +++nP+s
   mKIAA4216   607    QLVVEEIFNPDIGMFTY-----------------DEATKLFWFNPSS 636  

                   gesnpehervlkyFkflGrilGlAlydgrllDlpFsraFyKklLmagkps
                   +e+         +F+++G++lGlA+y++++lD++F++++y+kl+  gk+ 
   mKIAA4216   637 FET-------EGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLM--GKK- 676  

                   igivtleDlesvDPelynSLkwllendgdKkIedsLLgsledveedLeLt
                       t+ Dl +  P+ly+SLk lle++g+             ve+d+++t
   mKIAA4216   677 ---GTFRDLGDSHPVLYQSLKDLLEYEGS-------------VEDDMMIT 710  

                   FsveeessvgfeadarffGgtktveELkPnGrnipVTneNkeeYvelyvd
                   F++++ +   f       G+   ++ Lk+nG++ip TneN++e+v+ly d
   mKIAA4216   711 FQISQTDL--F-------GNPMMYD-LKENGDKIPITNENRKEFVNLYSD 750  

                   yrLnkgiekQfeAFrkGFsevipsrlLs.lFdpeELelLicGspeeiDvd
                   y+Lnk++ekQf+AFr+GF++v  ++ L+ lF+peE+elLicGs+ ++D++
   mKIAA4216   751 YILNKSVEKQFKAFRRGFHMVTNESPLKyLFRPEEIELLICGSR-NLDFQ 799  

                   dLkenTeYdggYtedsplktiqwFWevleeftneeraklLqFvTGssRlP
                   +L+e TeYdggYt++s   +i+ FWe++++ft+e+++++LqF+TG++R P
   mKIAA4216   800 ALEETTEYDGGYTRESV--VIREFWEIVHSFTDEQKRLFLQFTTGTDRAP 847  

                   vgGFkaLqgGsnGpPkFtIvrkegggdddrLPtAhTCFNrLkLPpYsSke
                   vgG+  L+        ++I+++  g+d++rLPt+hTCFN L LP+YsSke
   mKIAA4216   848 VGGLGKLK--------MIIAKN--GPDTERLPTSHTCFNVLLLPEYSSKE 887  

                   iLrekLllAInEgseGFgle<-*
                   +L+e+Ll+AI  + +GFg++   
   mKIAA4216   888 KLKERLLKAI-TYAKGFGML    906  

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