hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01538/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4215  ( 703 res)   mph01538

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Piwi     Piwi domain                                    507.1   1.3e-148   1
PAZ      PAZ domain                                     191.0    1.8e-53   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAZ        1/1      79   215 ..     1   160 []   191.0  1.8e-53
Piwi       1/1     361   662 ..     1   338 []   507.1 1.3e-148

Alignments of top-scoring domains:
PAZ: domain 1 of 1, from 79 to 215: score 191.0, E = 1.8e-53
                   *->qpvldfltdiltqrtrlgsdfqeeermfikkaLkGliVlttynnnkq
                      ++vldf + i++q ++l ++++ +    ++k++kGl+V++t+++++ 
   mKIAA4215    79    CEVLDFKS-IEEQQKPLTDSQRVK----FTKEIKGLKVEITHCGQM- 119  

                   pkerrtYrIdgisfdptpnstFplkrddeegegdgkeisvaeYykekYni
                      +r+Yr++ ++ +p++++tFpl+    +++g+++e++va+Y+k+++++
   mKIAA4215   120 ---KRKYRVCNVTRRPASHQTFPLQ----QESGQTVECTVAQYFKDRHKL 162  

                   elkypnlPllvvgkkkrrlnlgtpreqpnyLPpELCfitggqrymrkdfn
                    l+yp+lP+l+vg++++          ++yLP+E+C+i+ gqr+++k+++
   mKIAA4215   163 VLRYPHLPCLQVGQEQK----------HTYLPLEVCNIVAGQRCIKKLTD 202  

                   lqksiaiktrasp<-*
                   +q+s++i+++a++   
   mKIAA4215   203 NQTSTMIRATARS    215  

Piwi: domain 1 of 1, from 361 to 662: score 507.1, E = 1.3e-148
                   *->livvvlpddkkedldkflYdeiKkleltdlgipsQcvllktlkkrsk
                      l+vv+lp +k++      Y e+K++++t+lg+ +Qcv++k++ + ++
   mKIAA4215   361    LVVVILP-GKTPV-----YAEVKRVGDTVLGMATQCVQMKNVQRTTP 401  

                   qGgrltltNvilKtNmKlGGlNyklndekeprckVCNemrviplkptlii
                   q    tl N++lK+N+KlGG N +l +  +p          ++ +p++++
   mKIAA4215   402 Q----TLSNLCLKINVKLGGVNNILLPQGRPP---------VFQQPVIFL 438  

                   GfDvshppArTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
                   G Dv+hp         ++g++++ps+a+vv+smd  h+ ++ ++vr+q++
   mKIAA4215   439 GADVTHP---------PAGDGKKPSIAAVVGSMDA-HPNRYCATVRVQQH 478  

                   gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
                   +qE ++dl   ++re+L++fyk+tr  kP rIi+YRDGvSEGqf+qvl  
   mKIAA4215   479 RQEIIQDLAA-MVRELLIQFYKSTR-FKPTRIIFYRDGVSEGQFQQVLHH 526  

                   EvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdkrdggskaka
                   E+ +i+eac kl+++yq   P +t+IvvqKrHhtR+F+ dk+++  ++k+
   mKIAA4215   527 ELLAIREACIKLEKDYQ---PGITFIVVQKRHHTRLFCTDKNER--VGKS 571  

                   qNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdiglspd
                   +N+p GT+VD+kit+p+++dFylcs+ag+qGT++P hY+Vl+Dd+++s d
   mKIAA4215   572 GNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSD 621  

                   elqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-*
                   elq LTy+LC++y r+tr+vs+PaP+yYAhl+A+r+r++l+   
   mKIAA4215   622 ELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV    662  

//