hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01439/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4213  ( 509 res)   mpj01439

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    54.4    1.5e-11   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      83   118 ..     1    46 []     8.4       23
WD40       2/7     145   185 ..     1    46 []    10.2       12
WD40       3/7     227   266 ..     1    46 []    13.2        4
WD40       4/7     277   317 ..     1    46 []     9.5       15
WD40       5/7     336   374 ..     1    46 []     4.7       89
WD40       6/7     401   432 ..     1    46 []     1.9  2.5e+02
WD40       7/7     468   505 ..     1    46 []     6.7       42

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 83 to 118: score 8.4, E = 23
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +  +++ +       +++v f+++g      +lla+g++ g + ++
   mKIAA4213    83    VdDDVAEAD------IISTVEFNHSG------ELLATGDkGGRVVIF 117  

                   d<-*
                       
   mKIAA4213   118 Q    118  

WD40: domain 2 of 7, from 145 to 185: score 10.2, E = 12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   l++l+  +    ++ +++ p  ++     +++ + +D+ti+lW
   mKIAA4213   145    EfDYLKSLE-IEE--KINKIRWLPQKNA----AQFLLSTnDKTIKLW 184  

                   d<-*
                   +   
   mKIAA4213   185 K    185  

WD40: domain 3 of 7, from 227 to 266: score 13.2, E = 4
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgsDgtirlW
                      + ++ r++ ++Ht    ++s+++++d       +  +s++D  i lW
   mKIAA4213   227    EaSPRRIFAnAHTY--HINSISINSDY------ETYLSADDLRINLW 265  

                   d<-*
                   +   
   mKIAA4213   266 H    266  

WD40: domain 4 of 7, from 277 to 317: score 9.5, E = 15
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + ++  t    +t+  f+p++      n ++ +s+ gtirl 
   mKIAA4213   277    VdIKPANMEELTE--VITAAEFHPNS-----CNTFVYSSsKGTIRLC 316  

                   d<-*
                   d   
   mKIAA4213   317 D    317  

WD40: domain 5 of 7, from 336 to 374: score 4.7, E = 89
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  + ++   +  ++++v+fs++g      +++ + +  + +++W
   mKIAA4213   336    DpSNRSFFSEIIS--SISDVKFSHSG------RYMMTRDyLS-VKIW 373  

                   d<-*
                   d   
   mKIAA4213   374 D    374  

WD40: domain 6 of 7, from 401 to 432: score 1.9, E = 2.5e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++    +++          ++++ ++      +++ +gs ++  r++
   mKIAA4213   401    NdCIFDKFE----------CCWNGSD------SVVMTGSyNNFFRMF 431  

                   d<-*
                   d   
   mKIAA4213   432 D    432  

WD40: domain 7 of 7, from 468 to 505: score 6.7, E = 42
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   + +l+  ++   +++ a++p        n++a++ +++ ++++
   mKIAA4213   468    DeISVDSLD-FNK--KILHTAWHPKE------NIIAVATtNN-LYIF 504  

                   d<-*
                       
   mKIAA4213   505 Q    505  

//