hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01439/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4213  ( 509 res)   mpj01439

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        43.0    6.9e-09   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6      81   118 ..     1    38 []     6.1       36
WD40       2/6     147   185 ..     1    38 []    11.1      8.6
WD40       3/6     229   266 ..     1    38 []     9.4       14
WD40       4/6     279   317 ..     1    38 []     6.6       31
WD40       5/6     338   374 ..     1    38 []     9.2       15
WD40       6/6     469   505 ..     1    38 []     0.6  1.7e+02

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 81 to 118: score 6.1, E = 36
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +    +  + ++ v f+++ g+lla+g   g + i+    
   mKIAA4213    81    GAVDDDvAEADIISTVEFNHS-GELLATGDKGGRVVIFQ    118  

WD40: domain 2 of 6, from 147 to 185: score 11.1, E = 8.6
                   *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-*
                      + l++l+     ++ +++ p ++  +++ +  D+tik+W+   
   mKIAA4213   147    DYLKSLeIE-EKINKIRWLPQkNAAQFLLSTNDKTIKLWK    185  

WD40: domain 3 of 6, from 229 to 266: score 9.4, E = 14
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +++ ++Ht  +++++++ d +++ +s+ +   i +W+   
   mKIAA4213   229    SPRRIFanAHTYHINSISINSD-YETYLSADD-LRINLWH    266  

WD40: domain 4 of 6, from 279 to 317: score 6.6, E = 31
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         a  +  t  +t+  f+p+s+++++ +S+ gti++ d   
   mKIAA4213   279    IKPANMeELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD    317  

WD40: domain 5 of 6, from 338 to 374: score 9.2, E = 15
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         + ++   s++++v+fs++ g+++ +     ++kiWd   
   mKIAA4213   338    SNRSFFsEIISSISDVKFSHS-GRYMMTRDY-LSVKIWD    374  

WD40: domain 6 of 6, from 469 to 505: score 0.6, E = 1.7e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e      + ++ +   a++p   +++a +   ++++i+    
   mKIAA4213   469    EISVDSlDFNKKILHTAWHPK-ENIIAVATT-NNLYIFQ    505  

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