hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj31105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4211  ( 314 res)   mfj31105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                         -27.2      8e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       3   314 .]     1   771 []   -27.2    8e-28

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 3 to 314: score -27.2, E = 8e-28
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
   mKIAA4211     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                       +l            r                               
   mKIAA4211     3 ----RL------------R------------------------------- 5    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
   mKIAA4211     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
   mKIAA4211     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                                       ++ ++                         
   mKIAA4211     6 --------------------RMPIG------------------------- 10   

                   sgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILHLG
                               ++F +                                 
   mKIAA4211    11 ------------KHFLI--------------------------------- 15   

                   NieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkRki
                                 +vt+       +++kaA+L  +++++L+kaL+++++
   mKIAA4211    16 --------------CVTT-------VADKAAYLQCLNSADLLKALCYPRV 44   

                   ktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl....
                   k+g+e   ++tk ++v+q+++a++ALAKa+Y+++F W+V rIN++l++++
   mKIAA4211    45 KVGNE---YVTKGQTVQQVYNAVGALAKAVYEKMFLWMVTRINQQLdtkq 91   

                   .sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQEEY
                   +++yfIGVLDI+GFEiF++NS+EQ+CIN++NEKLQQfFn+h+F+lEQEEY
   mKIAA4211    92 pRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEY 141  

                   erEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAqPkg
                   ++EGIeWtfIdF++ D+ +ci+LIEk+    lGI+s+L+EeC+f   Pk+
   mKIAA4211   142 KKEGIEWTFIDFGM-DLAACIELIEKP----LGIFSILEEECMF---PKA 183  

                   TDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFiikHY
                   TD +F +KL    y+qh++k+ +f+kp       kp k +++++F++ HY
   mKIAA4211   184 TDTSFKNKL----YDQHLGKSNNFQKP-------KPAKGKAEAHFSLVHY 222  

                   AGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqsssaa
                   AG+V+Yn++G+L+KNkD+L++ ++ L q+S ++ +asLF+ +a+++++ +
   mKIAA4211   223 AGTVDYNITGWLDKNKDPLNDTVVGLYQKSAMKTLASLFSTYASAEADGG 272  

                   kekss.ggagksrkagrrepskgtisskkrppTvGsqFksLneLmetLns
                    +k+++++                   + +++Tv+++F+           
   mKIAA4211   273 AKKGAkKK-------------------GSSFQTVSALFR----------- 292  

                   tnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFPyRlp
                                                                     
   mKIAA4211     - -------------------------------------------------- -    

                   fdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglgiegdn
                          Yk+ l k++++               ++   +++         
   mKIAA4211   293 -----VKYKFRLGKKVYS---------------VSMYYICAI-------- 314  

                   ldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                                                    
   mKIAA4211     - ------------------------------    -    

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