hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj31105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4211  ( 314 res)   mfj31105

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Myosin_head Myosin head (motor domain)                    7.7    6.5e-15   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Myosin_head   1/1       1   314 []     1   795 []     7.7  6.5e-15

Alignments of top-scoring domains:
Myosin_head: domain 1 of 1, from 1 to 314: score 7.7, E = 6.5e-15
                   *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp
                                                                     
   mKIAA4211     -    ----------------------------------------------- -    

                   iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA
                             rG+    l                                
   mKIAA4211     1 ----------RGR----LR------------------------------- 5    

                   GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqiLqsNPiLEA
                                                                     
   mKIAA4211     - -------------------------------------------------- -    

                   FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy
                                R             ++    +G               
   mKIAA4211     6 -------------R-------------MP----IG--------------- 10   

                   QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc
                                          k +L                 +     
   mKIAA4211    11 -----------------------KHFLICV--------------T----- 18   

                   ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie
                    tv                                               
   mKIAA4211    19 -TV----------------------------------------------- 20   

                   GFkqdqatTGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrri
                                             + ++a L ++++++L+kaL+++r+
   mKIAA4211    21 --------------------------ADKAAYLQCLNSADLLKALCYPRV 44   

                   ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsa
                   k+G     +e+vtk+q+v+q+++a++ALAKa Y+++F W+V++iN+ L++
   mKIAA4211    45 KVG-----NEYVTKGQTVQQVYNAVGALAKAVYEKMFLWMVTRINQQLDT 89   

                   keQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEIFa
                   k+                              +r++fIGvLDI+GFEIF 
   mKIAA4211    90 KQ------------------------------PRQYFIGVLDIAGFEIF- 108  

                   ekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnq
                   ++NS+EQLcIN++NEKLQQfFNhhmF+lEQEEYk+EgIeWtfId+g+D+ 
   mKIAA4211   109 DFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLA 158  

                   acidLIEkKmkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlth
                   aci+LIEk   P+GI+s+L+EeC+fPkatD++F  KL++++++k+    +
   mKIAA4211   159 ACIELIEK---PLGIFSILEEECMFPKATDTSFKNKLYDQHLGKSN---N 202  

                   FaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlis
                   F qkp ++ kg   + +++F+++HYAG+V+Yn++g+l+KNkDpL+d++++
   mKIAA4211   203 F-QKP-KPAKG---KAEAHFSLVHYAGTVDYNITGWLDKNKDPLNDTVVG 247  

                   llksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaksaklg
                   l+++S + ++la+LF  ++                         + a++g
   mKIAA4211   248 LYQKSAM-KTLASLFSTYAS------------------------AEADGG 272  

                   sgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNek
                    +kg ++k+++f +Tv+++f+                             
   mKIAA4211   273 AKKGAKKKGSSF-QTVSALFR---------VKYK---------------F 297  

                   KkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLap
                   +  +++                         ++        +++Y+++a 
   mKIAA4211   298 RLGKKV-------------------------YS--------VSMYYICA- 313  

                   ktwpsgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiFfR<-
                     +                                               
   mKIAA4211   314 --I---------------------------------------------   314  

                   *
                    
   mKIAA4211     -   -    

//