hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj22326/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4210 ( 647 res) mfj22326 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 352.6 4.4e-102 6 BACK BTB And C-terminal Kelch 196.0 6e-55 1 BTB BTB/POZ domain 155.4 9.7e-43 1 Kelch_2 Kelch motif 146.7 4.2e-40 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 96 203 .. 1 135 [] 155.4 9.7e-43 BACK 1/1 208 310 .. 1 103 [] 196.0 6e-55 Kelch_1 1/6 345 390 .. 1 45 [] 45.9 9.2e-10 Kelch_2 1/6 339 390 .. 1 54 [] 18.7 0.14 Kelch_1 2/6 392 437 .. 1 45 [] 65.6 1.1e-15 Kelch_2 2/6 392 437 .. 1 54 [] 33.5 4.7e-06 Kelch_1 3/6 440 485 .. 1 45 [] 70.3 4e-17 Kelch_2 3/6 440 485 .. 1 54 [] 22.2 0.012 Kelch_1 4/6 487 532 .. 1 45 [] 67.2 3.5e-16 Kelch_2 4/6 487 532 .. 1 54 [] 32.2 1.2e-05 Kelch_1 5/6 534 579 .. 1 45 [] 61.4 1.9e-14 Kelch_2 5/6 534 579 .. 1 54 [] 23.0 0.007 Kelch_1 6/6 581 626 .. 1 45 [] 57.2 3.5e-13 Kelch_2 6/6 581 626 .. 1 54 [] 24.9 0.0019 Alignments of top-scoring domains: BTB: domain 1 of 1, from 96 to 203: score 155.4, E = 9.7e-43 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal n lr++ elcDV+Lvvg kk++AH+++L+acSpYF+a+ mKIAA4210 96 INLLRKHRELCDVVLVVG--------AKKIYAHRVILSACSPYFRAM 134 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg +es ++ e+ ++d++ ++e+l++f+Yt+ ++++ mKIAA4210 135 FTGE------LAESRQT-EVVIRDIDERAMELLIDFAYTSQITVE----- 172 PssckseenvedlLalAadllqipslvdkCeefliksl<-* e+nv+ lL +A +llq+ ++++C+efl+++l mKIAA4210 173 ------EGNVQTLLPAA-CLLQLAEIQEACCEFLKRQL 203 BACK: domain 1 of 1, from 208 to 310: score 196.0, E = 6e-55 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr fAd+++c+eL+ Ad+f+++nF+eV++seEF+ L+++qLi+ mKIAA4210 208 CLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLID 254 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky ++ssDeLnV+sEe+Vf+Avm+Wvk+ ++R+++lp++L+hVRLpLLspk+ mKIAA4210 255 IISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKF 304 Llevve<-* L+ +v mKIAA4210 305 LVGTVG 310 Kelch_1: domain 1 of 6, from 345 to 390: score 45.9, E = 9.2e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< + + ++ +++++GG++++ + +sve+YDp tn+W++++sm+ mKIAA4210 345 RTRPRKPIRCGEVLFAVGGWCSgDAISSVERYDPQTNEWRMVASMS 390 -* mKIAA4210 - - Kelch_2: domain 1 of 6, from 339 to 390: score 18.7, E = 0.14 *->pryphasvvp......ggklyvvGGsfkgnrgtgngdesssdllvld p+++ + p+++ + g+ l+ vGG+ ++++s++ ++d mKIAA4210 339 PLMQGPRTRPrkpircGEVLFAVGGW--------CSGDAISSVERYD 377 petnvWeklpalp<-* p+tn+W+ ++++ mKIAA4210 378 PQTNEWRMVASMS 390 Kelch_1: domain 2 of 6, from 392 to 437: score 65.6, E = 1.1e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g+gv vld+++Y++GG+dg+++lnsve+YDp+tn+W+ ++ mKIAA4210 392 RRCGVGVSVLDDLLYAVGGHDGsSYLNSVERYDPKTNQWSSDVAPT 437 -* mKIAA4210 - - Kelch_2: domain 2 of 6, from 392 to 437: score 33.5, E = 4.7e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ ++v+++ ly vGG+ +g+++++++ ++dp+tn+W mKIAA4210 392 RRCGVGVSVLDDLLYAVGGH--------DGSSYLNSVERYDPKTNQW 430 eklpalp<-* + a+ mKIAA4210 431 SSDVAPT 437 Kelch_1: domain 3 of 6, from 440 to 485: score 70.3, E = 4e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++gv+vl+g +Y++GG+dg ++ln ve+YDp++n+Wt+++sm+ mKIAA4210 440 CRTSVGVAVLGGFLYAVGGQDGvSCLNIVERYDPKENKWTRVASMS 485 -* mKIAA4210 - - Kelch_2: domain 3 of 6, from 440 to 485: score 22.2, E = 0.012 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r ++ ++v+gg ly vGG +g++ ++ + ++dp++n+W mKIAA4210 440 CRTSVGVAVLGGFLYAVGGQ--------DGVSCLNIVERYDPKENKW 478 eklpalp<-* ++++++ mKIAA4210 479 TRVASMS 485 Kelch_1: domain 4 of 6, from 487 to 532: score 67.2, E = 3.5e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R g++v+vl+g +Y++GG+dg+++ln+ve+Y+p +n+W+ +++m+ mKIAA4210 487 RRLGVAVAVLGGFLYAVGGSDGtSPLNTVERYNPQENRWHTIAPMG 532 -* mKIAA4210 - - Kelch_2: domain 4 of 6, from 487 to 532: score 32.2, E = 1.2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r ++a++v+gg ly vGGs +g + ++++ +++p++n+W mKIAA4210 487 RRLGVAVAVLGGFLYAVGGS--------DGTSPLNTVERYNPQENRW 525 eklpalp<-* + +++++ mKIAA4210 526 HTIAPMG 532 Kelch_1: domain 5 of 6, from 534 to 579: score 61.4, E = 1.9e-14 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R + g++v+++ iY++GG+d+++ l+s+e+Y+p+tn+W+++ m+ mKIAA4210 534 RRKHLGCAVYQDMIYAVGGRDDtTELSSAERYNPRTNQWSPVVAMT 579 -* mKIAA4210 - - Kelch_2: domain 5 of 6, from 534 to 579: score 23.0, E = 0.007 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++v+++ +y vGG+ ++ +s+ +++p+tn+W mKIAA4210 534 RRKHLGCAVYQDMIYAVGGR--------DDTTELSSAERYNPRTNQW 572 eklpalp<-* +++ a+ mKIAA4210 573 SPVVAMT 579 Kelch_1: domain 6 of 6, from 581 to 626: score 57.2, E = 3.5e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rsg+g +v++g++ ++GG+dg+++l+++ev+Dp+ ntW+ m+ mKIAA4210 581 RRSGVGLAVVNGQLMAVGGFDGtTYLKTIEVFDPDANTWRLYGGMN 626 -* mKIAA4210 - - Kelch_2: domain 6 of 6, from 581 to 626: score 24.9, E = 0.0019 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ ++v++g+l vGG+ +g ++ ++ v+dp+ n+W mKIAA4210 581 RRSGVGLAVVNGQLMAVGGF--------DGTTYLKTIEVFDPDANTW 619 eklpalp<-* + ++ mKIAA4210 620 RLYGGMN 626 //