hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00137/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4209  ( 1417 res)   mfj00137

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   110.0    2.7e-28   1
HELICc   helicase superfamily c-terminal domain          68.7    7.1e-16   1
ZnF_C3H1 zinc finger                                     35.3    8.5e-06   1
UBA      Ubiquitin associated domain                     27.0     0.0027   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBA        1/1     211   248 ..     1    38 []    27.0   0.0027
ZnF_C3H1   1/1     328   354 ..     1    31 []    35.3  8.5e-06
DEXDc      1/1     572   760 ..     1   219 []   110.0  2.7e-28
HELICc     1/1     892  1000 ..     1    86 []    68.7  7.1e-16

Alignments of top-scoring domains:
UBA: domain 1 of 1, from 211 to 248: score 27.0, E = 0.0027
                   *->deekieqLleMGFsreeavdALratngNverAaeyLls<-*
                         +++ L   GF  e++++ALr ++g++ +A+e+Ll+   
   mKIAA4209   211    SPLAVQKLSRYGFHTEHCQLALRICDGDLGAALEHLLR    248  

ZnF_C3H1: domain 1 of 1, from 328 to 354: score 35.3, E = 8.5e-06
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      ++ +e Ckf+ ++G   +C++G++Ckf H     
   mKIAA4209   328    DTSPETCKFY-LKG---NCKFGSKCKFKHEV    354  

DEXDc: domain 1 of 1, from 572 to 760: score 110.0, E = 2.7e-28
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         + ++  + +++ l ++++v++ + TG+GKT+++++++l+  ++g
   mKIAA4209   572    QLlPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNG 618  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   +p+     +   +++++P+r+ a+ +ae+++k+            ++vgl
   mKIAA4209   619 PPE-----RVANIICTQPRRISAISVAERVAKER----------AERVGL 653  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     G ++     +l+++ks +t++l++T+g+Ll+ l+ +    l+ + ++i
   mKIAA4209   654 TVGyQI-----RLESVKSSATRLLYCTTGVLLRRLeGDA--TLqGVTHII 696  

                   lDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppeien
                   +DE+H++           +d l+ +lk +  ++ ++q++l+SAT+     
   mKIAA4209   697 VDEVHERT--------EESDFLLlVLKDIvmqRATLQVILMSATL--DAG 736  

                   llklflnlpelfpnpvfisvgftlepieqf<-*
                   l +++++     + pv  ++g+  +p++qf   
   mKIAA4209   737 LFSKYFS-----YCPVITIPGR-AFPVDQF    760  

HELICc: domain 1 of 1, from 892 to 1000: score 68.7, E = 7.1e-16
                   *->delaelLkellkd.....pgikvarlHGglsqeeReeilekFrkgki
                      + l+e L+++ + +++++    + +lH++ls+ee+++++ k + g  
   mKIAA4209   892    KMLYEQLQSNSLFnnrrsHRCVIHPLHSSLSSEEQQAVFVKPPMGVT 938  

                   kvLvaTdvaerGlDipgvdlVInydl..................pwspas
                   k++++T++ae++++i++v +VI+ +  ++++ + +++ ++ +++  s a+
   mKIAA4209   939 KIIISTNIAETSITIDDVVYVIDSGKmkekrydagkgmesledtFVSQAN 988  

                   yiQRiGRaGRaG<-*
                   ++QR GRaGR     
   mKIAA4209   989 ALQRKGRAGRVA    1000 

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