hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj00137/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4209 ( 1417 res) mfj00137 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF1605 Domain of unknown function (DUF1605) 118.5 1.3e-31 1 HA2 Helicase associated domain (HA2) 85.7 9.5e-22 1 Helicase_C Helicase conserved C-terminal domain 58.8 1.2e-13 1 DEAD DEAD/DEAH box helicase 37.1 1.8e-07 1 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and sim 31.3 2.2e-05 1 UBA UBA/TS-N domain 25.0 0.0018 1 RWD RWD domain 7.6 0.0074 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- UBA 1/1 210 249 .. 1 45 [] 25.0 0.0018 zf-CCCH 1/1 329 354 .. 1 27 [] 31.3 2.2e-05 RWD 1/1 272 448 .. 1 148 [] 7.6 0.0074 DEAD 1/1 576 738 .. 1 266 [] 37.1 1.8e-07 Helicase_C 1/1 906 1000 .. 1 76 [] 58.8 1.2e-13 HA2 1/1 1066 1156 .. 1 124 [] 85.7 9.5e-22 DUF1605 1/1 1195 1344 .. 1 140 [] 118.5 1.3e-31 Alignments of top-scoring domains: UBA: domain 1 of 1, from 210 to 249: score 25.0, E = 0.0018 *->ideelvkqLreMGGGvfsreeakkALratnnnsDverAvewLleh<- +++ +v++L G f e++ ALr +++ D+ +A+e+Ll++ mKIAA4209 210 VSPLAVQKLSRYG---FHTEHCQLALRICDG--DLGAALEHLLRQ 249 * mKIAA4209 - - zf-CCCH: domain 1 of 1, from 329 to 354: score 31.3, E = 2.2e-05 *->yktelCrffsrtGtCkyGdrCkFaHge<-* e C+f+++ G Ck+G++CkF H + mKIAA4209 329 TSPETCKFYLK-GNCKFGSKCKFKHEV 354 RWD: domain 1 of 1, from 272 to 448: score 7.6, E = 0.0074 *->eykEeQedElEALeSIYegpdefevlssdyqfkiiitvLvfpynqig e+ E++++E +AL+SI +++f++ ++ mKIAA4209 272 ECVEQRQEETLALKSIC--GEKFIERIQN------------------ 298 etrgltppprfkItltpqsdtl............................ ++++I l + d+l+++ ++++++++++ +++++++ + mKIAA4209 299 --------RVWTIGLEL--DYLtnkfckskqkessknvrdtspetckfyl 338 ....................................egeedekvslvLqf +++ + +++ + +++ ++++ ++ +++ ++++ + +++ + l++ f mKIAA4209 339 kgnckfgskckfkhevpphqmigraernvndphldaDDDTTFMYELQIRF 388 tlpedYPdeaPpi.sllspknavlpdkLsdeqleeLlekLqeqaeenmll +YP+ aP++ + ++ +n L+ + + e L+ +a e + mKIAA4209 389 SKDHKYPYQAPLVaFYSTNEN------LPLACRLHISEFLYGKALEFAKT 432 Gevmifelvewvqefl<-* e++++ l++ + e+ mKIAA4209 433 SEPVVYSLITLLEEES 448 DEAD: domain 1 of 1, from 576 to 738: score 37.1, E = 1.8e-07 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf + + ++++ ++ v+ v+++ TG GKT+ mKIAA4209 576 AWEERETILKLLS-------KHQVV--------VISGMTGCGKTTQI 607 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae il + l+gp+++ +++ P+r a mKIAA4209 608 PQFIL--DNSLNGPPERV------------------ANIICTQPRRISAI 637 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx QiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqldk ++e++ k + rv++ +G q++ mKIAA4209 638 SVAERVAK-------------------ERAERVGLT--VG-----YQIRL 661 RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx l.rgkreskggpdIvvgTPgrLldllrngrinikievssertgkl.klkn + + ++ ++++++T g Ll+ l e l+ mKIAA4209 662 EsVK----SSATRLLYCTTGVLLRRL-------------EG---DaTLQG 691 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilHq + +++DE+h+ + + l +l+ + +ra+l mKIAA4209 692 V---THIIVDEVHERTEE----SDFLLLVLKDIVM---QRATL------- 724 RF xxxxxxxxxxxxxxxxxxxxx kpniQtllfSATlpprevedl<-* Q++l+SATl + + mKIAA4209 725 ----QVILMSATL-DA--GLF 738 Helicase_C: domain 1 of 1, from 906 to 1000: score 58.8, E = 1.2e-13 *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD + + + +lh++ls+ee+++++ k g +k++++T++a+++++ mKIAA4209 906 NRrSHRCVIHPLHSSLSSEEQQAVFVKPPMGVTKIIISTNIAETSIT 952 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i dv +VI+ + ++++ + +++ ++ +++ + ++ +QR GRaGR mKIAA4209 953 IDDVVYVIDSGKmkekrydagkgmesledtFVSQANALQRKGRAGRVA 1000 * mKIAA4209 - - HA2: domain 1 of 1, from 1066 to 1156: score 85.7, E = 9.5e-22 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf a+ +L+ LgAl d++LT plG+ +a+lP+d+r+gk++ ll+ +f mKIAA4209 1066 ASKVRLRDLGAL-TPDEKLT-PLGYHLASLPVDVRIGKLM-LLGSIF 1109 gcldealiiaaiLsvrgspfvntGvDRdaqrlpldksekakrWNiSrdla +cld+al+iaa L+ +spfv+ p dk+e+a mKIAA4209 1110 RCLDPALTIAASLAF-KSPFVS----------PWDKKEEAN--------- 1139 rakfegrsleksars.r.lts.lsDhlall<-* ++++++ sD lall mKIAA4209 1140 -------------QKkLeFAFaNSDYLALL 1156 DUF1605: domain 1 of 1, from 1195 to 1344: score 118.5, E = 1.3e-31 *->kQLlrilkrlglp..........................lnsssgdi +Q+ ++l ++g+++++ + ++ +++ +++++ + ++++ n +++++ mKIAA4209 1195 RQFTELLSDIGFVkeglrakeiekraqggdgvldatgeeANTNAENP 1241 ellrkailaGlypNvArresdrggkgsYktlrsvrlpv.r.kk.a.nisd +l+ ++++a+lypNv ++ +++++k +++s+ mKIAA4209 1242 KLISAVLCAALYPNVVQV-------------------KtPeGKfQkTSSG 1272 .v.kdgee.kg.fkt.ndgnVsiHPsSvLfntkkkppkwvvytelvetsk v++ + + +f+t+ndg+V+iHPsSv+ + ++++++++y+e+++ts+ mKIAA4209 1273 vVrLQPKSaELkFVTkNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSR 1322 kgdgskvYardvtaispewllllapgki<-* v++rd++++s ++l+l+++g++ mKIAA4209 1323 ------VFIRDCSMVSVYPLVLFGGGQV 1344 //