hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbe/mbe00555/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4208 ( 721 res) mbe00555 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 114.6 1.1e-29 6 IGc2 Immunoglobulin C-2 Type 58.6 7.9e-13 1 IG Immunoglobulin 42.4 6.2e-08 1 LRR_PS Leucine-rich repeat, plant-specific subfamil 34.6 1.3e-05 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/6 76 99 .. 1 24 [] 4.0 3.6e+02 LRR_TYP 1/6 76 99 .. 1 24 [] 19.9 0.36 LRR_PS 2/6 100 122 .. 1 24 [] 15.6 7.1 LRR_TYP 2/6 100 123 .. 1 24 [] 27.9 0.0014 LRR_PS 3/6 124 146 .. 1 24 [] 5.9 2e+02 LRR_TYP 3/6 124 147 .. 1 24 [] 25.0 0.01 LRR_PS 4/6 148 170 .. 1 24 [] 8.5 95 LRR_TYP 4/6 148 171 .. 1 24 [] 14.2 7.6 LRR_PS 5/6 172 194 .. 1 24 [] 5.4 2.4e+02 LRR_TYP 5/6 172 195 .. 1 24 [] 25.1 0.0099 LRR_PS 6/6 196 218 .. 1 24 [] 4.0 3.6e+02 LRR_TYP 6/6 196 220 .. 1 24 [] 9.5 29 IGc2 1/1 301 366 .. 1 56 [] 58.6 7.9e-13 IG 1/1 295 377 .. 1 58 [] 42.4 6.2e-08 Alignments of top-scoring domains: LRR_PS: domain 1 of 6, from 76 to 99: score 4.0, E = 3.6e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* +tsL+ L Ls N +s P + + mKIAA4208 76 MTSLVDLTLSRNTISFITPHAFAD 99 LRR_TYP: domain 1 of 6, from 76 to 99: score 19.9, E = 0.36 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +++L L Ls+N ++ + p aF++ mKIAA4208 76 MTSLVDLTLSRNTISFITPHAFAD 99 LRR_PS: domain 2 of 6, from 100 to 122: score 15.6, E = 7.1 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L+ L+L++N+L+ +I ++++ mKIAA4208 100 LRNLRALHLNSNRLT-KITNDMFS 122 LRR_TYP: domain 2 of 6, from 100 to 123: score 27.9, E = 0.0014 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nLr L+L++N+Lt + +++F+g mKIAA4208 100 LRNLRALHLNSNRLTKITNDMFSG 123 LRR_PS: domain 3 of 6, from 124 to 146: score 5.9, E = 2e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L +L L+nN+L+ I s+ ++ mKIAA4208 124 LSNLHHLILNNNQLT-LISSTAFD 146 LRR_TYP: domain 3 of 6, from 124 to 147: score 25.0, E = 0.01 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL +L L+nNqLt + + aF++ mKIAA4208 124 LSNLHHLILNNNQLTLISSTAFDD 147 LRR_PS: domain 4 of 6, from 148 to 170: score 8.5, E = 95 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++LdLs+NnL +IP + mKIAA4208 148 VFALEELDLSYNNLE-TIPWDAVE 170 LRR_TYP: domain 4 of 6, from 148 to 171: score 14.2, E = 7.6 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +L+eLdLs+N+L+++P +a + mKIAA4208 148 VFALEELDLSYNNLETIPWDAVEK 171 LRR_PS: domain 5 of 6, from 172 to 194: score 5.4, E = 2.4e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + sL +L L +N + IP+ ++ mKIAA4208 172 MVSLHTLSLDHNMID-NIPKGTFS 194 LRR_TYP: domain 5 of 6, from 172 to 195: score 25.1, E = 0.0099 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +++L +L+L++N + +P g+F++ mKIAA4208 172 MVSLHTLSLDHNMIDNIPKGTFSH 195 [output cut off at A = 10 top alignments] //