hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbe/mbe00555/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4208 ( 721 res) mbe00555 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_1 Leucine Rich Repeat 73.6 4e-18 7 I-set Immunoglobulin I-set domain 56.5 5.7e-13 1 ig Immunoglobulin domain 38.8 1.3e-07 1 fn3 Fibronectin type III domain 9.6 0.17 1 V-set Immunoglobulin V-set domain 2.2 0.37 1 C2-set_2 CD80-like C2-set immunoglobulin domain 0.1 0.61 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/7 54 77 .. 1 25 [] 6.0 2e+02 LRR_1 2/7 78 101 .. 1 25 [] 11.5 21 LRR_1 3/7 102 125 .. 1 25 [] 15.2 1.6 LRR_1 4/7 126 149 .. 1 25 [] 10.9 31 LRR_1 5/7 150 173 .. 1 25 [] 17.4 0.35 LRR_1 6/7 174 197 .. 1 25 [] 17.6 0.3 LRR_1 7/7 198 221 .. 1 25 [] 5.8 2.2e+02 ig 1/1 303 361 .. 1 65 [] 38.8 1.3e-07 C2-set_2 1/1 289 370 .. 1 101 [] 0.1 0.61 I-set 1/1 289 377 .. 1 97 [] 56.5 5.7e-13 V-set 1/1 287 377 .. 1 130 [] 2.2 0.37 fn3 1/1 418 498 .. 1 84 [] 9.6 0.17 Alignments of top-scoring domains: LRR_1: domain 1 of 7, from 54 to 77: score 6.0, E = 2e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* + eL+L + N ++ + ++ +++ mKIAA4208 54 RTVELRLAD-N-FVT-NIKRKdFaNMT 77 LRR_1: domain 2 of 7, from 78 to 101: score 11.5, E = 21 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L L Ls+ N +s + p+++ +l+ mKIAA4208 78 SLVDLTLSR-N-TIS-FITPHaFaDLR 101 LRR_1: domain 3 of 7, from 102 to 125: score 15.2, E = 1.6 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL+ L+L++ N +l+ + ++ ++gl+ mKIAA4208 102 NLRALHLNS-N-RLT-KITNDmFsGLS 125 LRR_1: domain 4 of 7, from 126 to 149: score 10.9, E = 31 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL +L L++ N +l+ +++ ++++ mKIAA4208 126 NLHHLILNN-N-QLT-LISSTaFdDVF 149 LRR_1: domain 5 of 7, from 150 to 173: score 17.4, E = 0.35 *->nLeeLdLsgCNpslsgslpps.l.glp<-* LeeLdLs+ N +l+ ++p ++ +++ mKIAA4208 150 ALEELDLSY-N-NLE-TIPWDaVeKMV 173 LRR_1: domain 6 of 7, from 174 to 197: score 17.6, E = 0.3 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L +L+L++ N ++ + +p++++++l mKIAA4208 174 SLHTLSLDH-N-MI-DNIPKGtFsHLH 197 LRR_1: domain 7 of 7, from 198 to 221: score 5.8, E = 2.2e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* + + Ld+ + N +l+ lpp++l mKIAA4208 198 KMTRLDVTS-N-KLQ-KLPPDpLfQRA 221 ig: domain 1 of 1, from 303 to 361: score 38.8, E = 1.3e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++tL+C + g+p++ ++W + ++l++ + + +ng+ mKIAA4208 303 GQRATLRCKA--RGDPEPAIHWISPEGkLIsNATRSLVYDNGT---- 343 tsLtitnvtpeDggtYtCvv<-* L i+ +t D+g +tC + mKIAA4208 344 --LDILITTVKDTGAFTCIA 361 C2-set_2: domain 1 of 1, from 289 to 370: score 0.1, E = 0.61 *->peIeppasllegeksenlevvatCvlpysagGkPapritWyldgkel p I+ + + e+++ +++C a G P+p i W++ + l mKIAA4208 289 PLITRHTHEMRVL--EGQRATLRCK----ARGDPEPAIHWISPEGKL 329 vpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsygal ++ + + + ++g+ + L +++ + +tC++s++a+ mKIAA4208 330 -------ISNATRSLVYDNGTLDI---LITTVK---DTGAFTCIASNPAG 366 rgsk<-* + + mKIAA4208 367 EATQ 370 I-set: domain 1 of 1, from 289 to 377: score 56.5, E = 5.7e-13 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P +t++ + + V eG++a++ Ck++G+PeP + W +G+ +s mKIAA4208 289 PLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPeGKLIS---- 331 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV + +yd+ tL I+ + D G tC+A+N+aGea+ ++ L++ mKIAA4208 332 -NATRSLVYDN----GTLDILITTVKDTGAFTCIASNPAGEATQTVDLHI 376 q<-* mKIAA4208 377 I 377 V-set: domain 1 of 1, from 287 to 377: score 2.2, E = 0.37 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++ +++ + + +v eG+++tL+C+ + +d+ mKIAA4208 287 EPPLITRHTH----------EMRVLEGQRATLRCKAR---GDP---- 316 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + ++W +li+ + ++++ + mKIAA4208 317 EP-AIHWIS-PEG----KLIS--------------------NATRSLVYD 340 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++ +L I ++ D+G +C +++ ++ + + L++ mKIAA4208 341 NG----TLDILITTVKDTGAFTCIasnpageaTQTVDLHII 377 fn3: domain 1 of 1, from 418 to 498: score 9.6, E = 0.17 *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.. s+ + +++++ ts+++ l + ++ i ++++y ++ +++ mKIAA4208 418 MSQDKIVVAEA-TSSTALLKFNFQRNIPGIRMFQIQYN---GTYDdt 460 wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-* + +++p+t+ ++ +++L gt Y ++V A+ ++ G S mKIAA4208 461 LVYRMIPPTSKTFLVNNLASGTMYDLCVLAIYDD-GITS 498 //