hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph00550/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4207 ( 780 res) mph00550 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S_TKc Serine/Threonine protein kinases, catalytic 375.1 4.2e-108 1 TyrKc Tyrosine kinase, catalytic domain 100.8 1.5e-25 1 UBA Ubiquitin associated domain 37.3 2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TyrKc 1/1 57 307 .. 1 280 [] 100.8 1.5e-25 S_TKc 1/1 57 308 .. 1 231 [] 375.1 4.2e-108 UBA 1/1 329 366 .. 1 38 [] 37.3 2e-06 Alignments of top-scoring domains: TyrKc: domain 1 of 1, from 57 to 307: score 100.8, E = 1.5e-25 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr +l+k++G G+F +V +++ + ++ eVAVK + + ++++++ + r mKIAA4207 57 YRLLKTIGKGNFAKVKLARHIltgKEVAVKIIDKTQlnsssLQKLFR 103 EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy E +iMk l +HpNiVkL+ v+ +e + l++vmEy++gG dy mKIAA4207 104 EVRIMKVL--NHPNIVKLFEVIETE-------KTLYLVMEYASGGEVFDY 144 LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv L ++++ + ++ QI + +Y ++k +vHRDL A N L++++ + mKIAA4207 145 LVAHGR-MKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNI 193 KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk KI+DFG s + + + + + +g P+ APE ++ +k mKIAA4207 194 KIADFGFSNEFTFG------NKLDTF----CGS--PPYA--APELFQGKK 229 Ft.skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp + +++ DVWS GV L+ + + G P g + +e++e++ +G + mKIAA4207 230 YDgPEVDVWSLGVILYTLVS-GSLPFDG-----QNLKELRERVLRG-KYR 272 kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-* +P + ++++ +l ++ +P++R t +++ ++r+ mKIAA4207 273 IPFY--------MSTDCENLLKKFLILNPSKRGTLEQImKDRW 307 S_TKc: domain 1 of 1, from 57 to 308: score 375.1, E = 4.2e-108 *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr Y+llk++GkG F+kV+lar++ tg++vA+K+i++++ ++++ +++ r mKIAA4207 57 YRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDktqlnssslQKLFR 103 EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr E++i+k +HPNIVkL++v+e+++ lylVmEy++G G++fd+l+ +gr mKIAA4207 104 EVRIMKVlNHPNIVKLFEVIETeKTLYLVMEYASG--GEVFDYLVAHGR- 150 glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl + E+ear frQi+sa++Y+H++ I+HRDLK eN+LLd + ++K+ mKIAA4207 151 -----MKEkEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDAdmNIKI 195 aDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily aDFG++ +++ +++ +tf+G+p Y APE++++++Y++p+vD+WSlG+ily mKIAA4207 196 ADFGFSNEFtfgnklDTFCGSPPYAAPELFqgkKYDGPEVDVWSLGVILY 245 ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek l++G PF++++l+++ +++++++++ + + S ++ +L+kk L +P+k mKIAA4207 246 TLVSGSLPFDgqNLKELRERVLrgkyripfymSTDCENLLKKFLILNPSK 295 Rlta.eaLedeldikaHPff<-* R t +++++ + ++ mKIAA4207 296 RGTLeQIMK-------DRWM 308 UBA: domain 1 of 1, from 329 to 366: score 37.3, E = 2e-06 *->deekieqLleMGFsreeavdALratngNverAaeyLls<-* d + e +++MG++ree++d+L + +N+ +A+++Ll mKIAA4207 329 DPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLG 366 //