hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03925/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4206  ( 1093 res)   mbg03925

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     73.5    2.7e-17   5
HOX      Homeodomain                                     25.6    0.00077   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/5     255   279 ..     1    23 []    16.4        4
ZnF_C2H2   2/5     316   340 ..     1    23 []    21.9    0.088
ZnF_C2H2   3/5     425   449 ..     1    23 []    14.1        8
HOX        1/1     899   973 ..     1    63 []    25.6  0.00077
ZnF_C2H2   4/5     985  1007 ..     1    23 []    18.4        1
ZnF_C2H2   5/5    1053  1076 ..     1    23 []    25.1   0.0097

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 5, from 255 to 279: score 16.4, E = 4
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C+  C+  + +  +L+ Hm ++ H   
   mKIAA4206   255    FRCKD-CSAAYDTLvELTVHMNetGH    279  

ZnF_C2H2: domain 2 of 5, from 316 to 340: score 21.9, E = 0.088
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg sf s ++L  Hm +++H   
   mKIAA4206   316    LKCMY-CGHSFESLqDLSVHMIktKH    340  

ZnF_C2H2: domain 3 of 5, from 425 to 449: score 14.1, E = 8
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg s  + ++L+ Hm+ + H   
   mKIAA4206   425    LKCME-CGSSHDTLqQLTAHMMvtGH    449  

HOX: domain 1 of 1, from 899 to 973: score 25.6, E = 0.00077
                   *->krrkRts.ftpeQleeLEkeFeknp...........YPsreereeLA
                      kr+ R+s+++p+ l +L++ F+ + +++ +++   + + ++er +++
   mKIAA4206   899    KRKGRQSnWNPQHLLILQAQFASSLretaegkyimsDLGPQERVHIS 945  

                   keLgLterqVkvWFQNRRakwkrqekkk<-*
                   k +gL+ + +  W  N  + ++r    k   
   mKIAA4206   946 KFTGLSMTTISHWLANVKYQLRRTGGTK    973  

ZnF_C2H2: domain 4 of 5, from 985 to 1007: score 18.4, E = 1
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C  +f++++ ++ H+ +H   
   mKIAA4206   985    FFCND-CASQFRTAsTYVSHLETH    1007 

ZnF_C2H2: domain 5 of 5, from 1053 to 1076: score 25.1, E = 0.0097
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C+++f sk+a k H+ ++H   
   mKIAA4206  1053    FQCKL-CNRTFASKhAVKLHLSkTH    1076 

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