hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg03925/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4206 ( 1093 res) mbg03925 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 72.1 1.2e-17 5 Homeobox Homeobox domain -1.9 0.0087 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/5 255 279 .. 1 24 [] 20.4 0.042 zf-C2H2 2/5 316 340 .. 1 24 [] 19.2 0.098 zf-C2H2 3/5 425 449 .. 1 24 [] 11.4 7.9 Homeobox 1/1 901 968 .. 1 57 [] -1.9 0.0087 zf-C2H2 4/5 985 1007 .. 1 24 [] 19.9 0.06 zf-C2H2 5/5 1053 1076 .. 1 24 [] 23.0 0.0073 Alignments of top-scoring domains: zf-C2H2: domain 1 of 5, from 255 to 279: score 20.4, E = 0.042 *->ykCpfdCgksFsrksnLkrHlrt..H<-* ++C+ dC ++ + +L+ H++ ++H mKIAA4206 255 FRCK-DCSAAYDTLVELTVHMNEtgH 279 zf-C2H2: domain 2 of 5, from 316 to 340: score 19.2, E = 0.098 *->ykCpfdCgksFsrksnLkrHlrt..H<-* kC +Cg sF + +L H+ +++H mKIAA4206 316 LKCM-YCGHSFESLQDLSVHMIKtkH 340 zf-C2H2: domain 3 of 5, from 425 to 449: score 11.4, E = 7.9 *->ykCpfdCgksFsrksnLkrHlrt..H<-* kC +Cg s + +L++H+++++H mKIAA4206 425 LKCM-ECGSSHDTLQQLTAHMMVtgH 449 Homeobox: domain 1 of 1, from 901 to 968: score -1.9, E = 0.0087 *->rrkRTtftpeQleeLEkeFq...........knrYPsreeReeLAkk + + + p+ l++L++ F+++ +++ +++ + + ++eR +++k mKIAA4206 901 KGRQSNWNPQHLLILQAQFAsslretaegkyIMSDLGPQERVHISKF 947 LgLterqVkvWFQNRRaKwKk<-* +gL+ + + W N ++ ++ mKIAA4206 948 TGLSMTTISHWLANVKYQLRR 968 zf-C2H2: domain 4 of 5, from 985 to 1007: score 19.9, E = 0.06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ dC F++ s++ +Hl tH mKIAA4206 985 FFCN-DCASQFRTASTYVSHLETH 1007 zf-C2H2: domain 5 of 5, from 1053 to 1076: score 23.0, E = 0.0073 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ C+++F +k+ k Hl ++H mKIAA4206 1053 FQCK-LCNRTFASKHAVKLHLSKtH 1076 //