hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj21207/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4205  ( 653 res)   mfj21207

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    173.9    1.5e-47   9
KRAB     krueppel associated box                         79.4    4.3e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      33    93 ..     1    62 []    79.4  4.3e-19
ZnF_C2H2   1/9     406   428 ..     1    23 []    21.7      0.1
ZnF_C2H2   2/9     434   456 ..     1    23 []    27.8   0.0015
ZnF_C2H2   3/9     462   484 ..     1    23 []    24.8    0.012
ZnF_C2H2   4/9     490   512 ..     1    23 []    26.2   0.0046
ZnF_C2H2   5/9     518   540 ..     1    23 []    27.8   0.0014
ZnF_C2H2   6/9     546   568 ..     1    23 []    28.3   0.0011
ZnF_C2H2   7/9     574   596 ..     1    23 []    26.8   0.0029
ZnF_C2H2   8/9     602   624 ..     1    23 []    22.8     0.05
ZnF_C2H2   9/9     630   652 ..     1    23 []    28.0   0.0013

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 33 to 93: score 79.4, E = 4.3e-19
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      +tF+DVAVdFs++EWe+LDp Q+ LYRdVM ENY+nLvS+G      
   mKIAA4205    33    LTFRDVAVDFSPDEWECLDPPQQRLYRDVMVENYRNLVSVG-EDSIP 78   

                   pdliskLEqgeEpwi<-*
                    +l +         +   
   mKIAA4205    79 AELPTHCHHFMPFLS    93   

ZnF_C2H2: domain 1 of 9, from 406 to 428: score 21.7, E = 0.1
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f+  +++++H  +H   
   mKIAA4205   406    YKCNE-CGKAFKYCsSYRKHSIIH    428  

ZnF_C2H2: domain 2 of 9, from 434 to 456: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgksf++  +Lk+H+r+H   
   mKIAA4205   434    YKCKL-CGKSFTQCaSLKKHQRIH    456  

ZnF_C2H2: domain 3 of 9, from 462 to 484: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+sf++++ L +H+r+H   
   mKIAA4205   462    YRCEE-CGRSFNHYsILGQHQRIH    484  

ZnF_C2H2: domain 4 of 9, from 490 to 512: score 26.2, E = 0.0046
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgksf++ ++L++H+ +H   
   mKIAA4205   490    YKCKQ-CGKSFTQCsSLQKHQVIH    512  

ZnF_C2H2: domain 5 of 9, from 518 to 540: score 27.8, E = 0.0014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgksf++ + L +H+r+H   
   mKIAA4205   518    YRCAE-CGKSFTQNsTLSQHQRIH    540  

ZnF_C2H2: domain 6 of 9, from 546 to 568: score 28.3, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ ++L++H+r+H   
   mKIAA4205   546    YKCEE-CGKAFTQCsSLRKHQRIH    568  

ZnF_C2H2: domain 7 of 9, from 574 to 596: score 26.8, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cg+ f+ ++++++H r+H   
   mKIAA4205   574    YKCEV-CGRAFNCRsSFTKHKRIH    596  

ZnF_C2H2: domain 8 of 9, from 602 to 624: score 22.8, E = 0.05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  C+k f + ++L++H+r+H   
   mKIAA4205   602    YKCKD-CDKAFIHCtNLIQHQRIH    624  

ZnF_C2H2: domain 9 of 9, from 630 to 652: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgksfs+ ++L++H r+H   
   mKIAA4205   630    YKCNE-CGKSFSQCsNLRKHERIH    652  

	[output cut off at A = 10 top alignments]
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