hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj21207/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4205  ( 653 res)   mfj21207

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         228.4      1e-64   9
KRAB     KRAB box                                        97.0    3.6e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      33    73 ..     1    41 []    97.0  3.6e-25
zf-C2H2    1/9     406   428 ..     1    24 []    26.7  0.00053
zf-C2H2    2/9     434   456 ..     1    24 []    34.6  2.3e-06
zf-C2H2    3/9     462   484 ..     1    24 []    25.5   0.0013
zf-C2H2    4/9     490   512 ..     1    24 []    33.5    5e-06
zf-C2H2    5/9     518   540 ..     1    24 []    37.8  2.6e-07
zf-C2H2    6/9     546   568 ..     1    24 []    37.6  2.9e-07
zf-C2H2    7/9     574   596 ..     1    24 []    25.5   0.0013
zf-C2H2    8/9     602   624 ..     1    24 []    31.9  1.5e-05
zf-C2H2    9/9     630   652 ..     1    24 []    37.1  3.9e-07

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 33 to 73: score 97.0, E = 3.6e-25
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      +tF+DVAVdF+ +EW++Ldp Q+ LYrdVM ENyrnLvS+g   
   mKIAA4205    33    LTFRDVAVDFSPDEWECLDPPQQRLYRDVMVENYRNLVSVG    73   

zf-C2H2: domain 1 of 9, from 406 to 428: score 26.7, E = 0.00053
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F+  s++++H  +H   
   mKIAA4205   406    YKCN-ECGKAFKYCSSYRKHSIIH    428  

zf-C2H2: domain 2 of 9, from 434 to 456: score 34.6, E = 2.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  CgksF++ ++Lk+H+r+H   
   mKIAA4205   434    YKCK-LCGKSFTQCASLKKHQRIH    456  

zf-C2H2: domain 3 of 9, from 462 to 484: score 25.5, E = 0.0013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg+sF++ s L +H+r+H   
   mKIAA4205   462    YRCE-ECGRSFNHYSILGQHQRIH    484  

zf-C2H2: domain 4 of 9, from 490 to 512: score 33.5, E = 5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +CgksF++ s+L++H+ +H   
   mKIAA4205   490    YKCK-QCGKSFTQCSSLQKHQVIH    512  

zf-C2H2: domain 5 of 9, from 518 to 540: score 37.8, E = 2.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +CgksF+++s+L +H+r+H   
   mKIAA4205   518    YRCA-ECGKSFTQNSTLSQHQRIH    540  

zf-C2H2: domain 6 of 9, from 546 to 568: score 37.6, E = 2.9e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F++ s+L++H+r+H   
   mKIAA4205   546    YKCE-ECGKAFTQCSSLRKHQRIH    568  

zf-C2H2: domain 7 of 9, from 574 to 596: score 25.5, E = 0.0013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++F+ +s++++H+r+H   
   mKIAA4205   574    YKCE-VCGRAFNCRSSFTKHKRIH    596  

zf-C2H2: domain 8 of 9, from 602 to 624: score 31.9, E = 1.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ dC+k+F +  nL +H+r+H   
   mKIAA4205   602    YKCK-DCDKAFIHCTNLIQHQRIH    624  

zf-C2H2: domain 9 of 9, from 630 to 652: score 37.1, E = 3.9e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +CgksFs+ snL++H r+H   
   mKIAA4205   630    YKCN-ECGKSFSQCSNLRKHERIH    652  

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