hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj16282/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4203 ( 1062 res) mfj16282 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TyrKc Tyrosine kinase, catalytic domain 449.7 1.5e-130 1 S_TKc Serine/Threonine protein kinases, catalytic 186.3 2.8e-51 1 B41 Band 4.1 homologues 146.6 2.6e-39 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- B41 1/1 41 268 .. 1 232 [] 146.6 2.6e-39 TyrKc 1/1 432 686 .. 1 280 [] 449.7 1.5e-130 S_TKc 1/1 432 690 .. 1 231 [] 186.3 2.8e-51 Alignments of top-scoring domains: B41: domain 1 of 1, from 41 to 268: score 146.6, E = 2.6e-39 *->spkprvlkVylldgt.......tlefevdssttaeelletvcrklgl ++rvlkV+ + ++++++++ ++++ +t+++ ++++++ + + mKIAA4203 41 GAMERVLKVFHYFESssepttwASIIRHGDATDVRGIIQKIVDSHKV 87 spreseyFgLqfedkded.shWldpaktilkqdvks...pksepltlyFR ++ ++g ++ + + ++hWl+ + + +++k++ +++e++++ +R mKIAA4203 88 --KHVACYGFRLSHLRSEeVHWLHVDMGVSSVREKYelaHPPEEWKYELR 135 vkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeeallLA +++ p+ + +q++eD+ ++n++y+Qv++d++++ + ++e al L+ mKIAA4203 136 IRYLPKGF---LNQFTEDKPTLNFFYQQVKSDYMQEIADQVDQEIALKLG 182 aLalqaefGdydpeeeekkkslkhvakelslkrflPkqlldsikasflqi +L +++ + ++ +++ekk+++++++k+++lkrf+Pk+llds+ka mKIAA4203 183 CLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKA----- 227 qltlkewrerIvelhkehaglspeeaklkYLelarrLpptYGvelF<-* k +r+ I++ ++++a+l++ee+ lk++e+++ ++ e+F mKIAA4203 228 ----KTLRKLIQQTFRQFANLNREESILKFFEILSPVY-RFDKECF 268 TyrKc: domain 1 of 1, from 432 to 686: score 449.7, E = 1.5e-130 *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda....keeF ++lg+ +GeG+FG V++G++ +++++ + VA+Kt+k++++++ +e F mKIAA4203 432 IELGRCIGEGQFGDVHQGVYLspenpaLAVAIKTCKNCTsdsvREKF 478 lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl l+Ea M+++ +Hp+iVkL+Gv+te P++i+mE++ +G L+ mKIAA4203 479 LQEALTMRQF--DHPHIVKLIGVITE--------NPVWIIMELCTLGELR 518 dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk ++L+ ++ l l+ L+ +A+Q + +YLesk+fvHRD+AARN+Lv++n mKIAA4203 519 SFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSND 568 vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd +vK +DFGLsR+ +d yY+++ gk lPi+WmAPEs+++ mKIAA4203 569 CVKLGDFGLSRYMEDS-------TYYKAS---KGK--LPIKWMAPESINF 606 gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl ++Fts+SDVW+FGV++WEi+ G +P g ++n +v+ ++++G+Rl mKIAA4203 607 RRFTSASDVWMFGVCMWEILMHGVKPFQG-----VKNNDVIGRIENGERL 651 pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-* p P+n CP+ lY+lM++CWa+dP+ RP+F+el+ +l mKIAA4203 652 PMPPN--------CPPTLYSLMTKCWAYDPSRRPRFTELKAQL 686 S_TKc: domain 1 of 1, from 432 to 690: score 186.3, E = 2.8e-51 *->YellkklGkGaFGkVylardkk...tgrlvAiKvik........eri el++ +G+G FG V++++ ++++ vAiK k+ ++++ +e++ mKIAA4203 432 IELGRCIGEGQFGDVHQGVYLSpenPALAVAIKTCKnctsdsvrEKF 478 lrEikiLkk.dHPNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgr l+E +++ dHP+IVkL++v+ ++ ++++mE+c G+L+++l+ r++ mKIAA4203 479 LQEALTMRQfDHPHIVKLIGVITENPVWIIMELCTL--GELRSFLQVRKY 526 rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK l+ y++Q+ aL+YL s++++HRD+ N+L++s+++vK mKIAA4203 527 S-----LDLaSLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSndCVK 571 laDFGlArql........ttfvGTpeYmAPEvl...gYgkpavDiWSlGc l+DFGl+r +++++ + + +mAPE ++ + ++ a+D+W +G+ mKIAA4203 572 LGDFGLSRYMedstyykaSKGKLPIKWMAPESInfrRFTS-ASDVWMFGV 620 ilyEllt.GkpPFp..qldlifkkig...........SpeakdLikklLv +++E l +G PF++ + ++ +i ++++ + +++ +p + +L+ k++ mKIAA4203 621 CMWEILMhGVKPFQgvKNNDVIGRIEngerlpmppncPPTLYSLMTKCWA 670 kdPekRlta.eaLedeldikaHPff<-* +dP++R+ +e+ + + + mKIAA4203 671 YDPSRRPRFtELKA-----QLSTIL 690 //