hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj16282/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4203 ( 1062 res) mfj16282 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase_Tyr Protein tyrosine kinase 496.4 2.3e-145 1 Focal_AT Focal adhesion targeting region 360.9 1.3e-104 1 Pkinase Protein kinase domain 153.5 3.6e-42 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pkinase 1/1 432 686 .. 1 287 [] 153.5 3.6e-42 Pkinase_Tyr 1/1 432 686 .. 1 272 [] 496.4 2.3e-145 Focal_AT 1/1 924 1062 .] 1 139 [] 360.9 1.3e-104 Alignments of top-scoring domains: Pkinase: domain 1 of 1, from 432 to 686: score 153.5, E = 3.6e-42 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt +el++++G+G fG V +++ + + + VA+K+ k ++ +s ++ mKIAA4203 432 IELGRCIGEGQFGDVHQGVYLSPENpalAVAIKTCKNCTSDS--VRE 476 arrrsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdy ++++ E+ ++ ++Hp+Iv+li+v +++ +++++E+c G +L ++ mKIAA4203 477 KFLQ-EALTMRQFDHPHIVKLIGVI-TENPVWIIMELCTLG----ELRSF 520 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILlde l+ rk +l + ++ +a+Q+ +l+YL s++++HRD+ N+L+++ mKIAA4203 521 LQ--VRKYSL--DLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 566 ngvvdaflKiaDFGlAkklst.sss.lttfvGTpw..YmAPEvllggngy n+ v K++DFGl++ + s+ ++ G ++ ++mAPE ++ + mKIAA4203 567 NDCV----KLGDFGLSRY--MeDSTyYKASKGKLPikWMAPESIN-FRRF 609 gtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplefd ++++DvW +Gv ++e l +G PF+g +++d + +i++ + p + + mKIAA4203 610 TSASDVWMFGVCMWEILMhGVKPFQGV---KnNDVIGRIENGERLPMPPN 656 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< +p +++ +L++kc+++DPs+R+ ++e++ + mKIAA4203 657 CP-----------------PTLYSLMTKCWAYDPSRRPRFTELKAQ--L 686 -* mKIAA4203 - - Pkinase_Tyr: domain 1 of 1, from 432 to 686: score 496.4, E = 2.3e-145 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie ++lg+ +GeG+FG+V++G++ s+e++ + VA+Kt+k+ +s++ mKIAA4203 432 IELGRCIGEGQFGDVHQGVYL-SPENPALAVAIKTCKN-CTSDSV-- 474 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL re+Fl+EA +M+++ dHp+iV+L+Gv+t + P ++i++E++ +G L mKIAA4203 475 REKFLQEALTMRQF-DHPHIVKLIGVIT--ENP----VWIIMELCTLGEL 517 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fL+ + + +L+l+ L+ +a+Q + +++YLesk+fvHRD+AARN+LVs mKIAA4203 518 RSFLQVR--KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS 565 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS +n +VK +DFGL+R++ +d+ Y +k ++gklP+kWmAPEs+++++Fts+S mKIAA4203 566 SNDCVKLGDFGLSRYM-EDSTY-YKASKGKLPIKWMAPESINFRRFTSAS 613 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVW+FGV++WEi+ G +P ++g++n +v+ ++ e+G+RLp+P+nCP+ l mKIAA4203 614 DVWMFGVCMWEILMHGVKP-FQGVKNNDVIGRI-ENGERLPMPPNCPPTL 661 YdlMlqCWaedPedRPtFselverL<-* Y+lM++CWa+dP++RP+F+el +L mKIAA4203 662 YSLMTKCWAYDPSRRPRFTELKAQL 686 Focal_AT: domain 1 of 1, from 924 to 1062: score 360.9, E = 1.3e-104 *->tanldRadDeVYlnvtllVkavleLsqevekappEgYvelVKnVGlk tanldR++D+VY+nvt+lVkav+e+s+++++appE+Yv++VK+VGl+ mKIAA4203 924 TANLDRSNDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLA 970 LRkLLtSVDeilpiLPAsalkEiemAqklLnkDLaELinkMrLAQQYsvT LR+LL++VDe p LPAs+++EiemAqklLn+DL ELi+kM+LAQQY++T mKIAA4203 971 LRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELISKMKLAQQYVMT 1020 sLdeEYkkqMLtAAHvLAvDAKNLLDvVDqarlryqllfpPs<-* sL++EYkkqMLtAAH+LAvDAKNLLDv+Dqarl++ + +P+ mKIAA4203 1021 SLQQEYKKQMLTAAHALAVDAKNLLDVIDQARLKMLGQTRPH 1062 //