hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00623/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4202  ( 520 res)   mpj00623

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          154.5    1.9e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UCH        1/1     122   453 ..     1   273 []   154.5  1.9e-42

Alignments of top-scoring domains:
UCH: domain 1 of 1, from 122 to 453: score 154.5, E = 1.9e-42
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx     
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyesein.....
                      ++++GL NlG+TCY N  LQ          ++l+ + ++ +   +++
   mKIAA4202   122    NSFVGLTNLGATCYVNTFLQ---------VWFLNLELRQALYlcpst 159  

                RF           xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxx
                   ..........esnplgskgsllcaladLfnalqsg.yksvvpsplkflqf
                    ++ +++++ +  +    + ++++l+ Lf+ lq+++++++ ps+      
   mKIAA4202   160 csdytkgdgiHGGKDYEPQTICEHLQYLFALLQNSnRRYIDPSG------ 203  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kttlgkineefsgymQqDAhEFllfLLdgLhedlnrvnkkpytepesdkr
                       + ++  +++++QqDA+EF    +  L++ l++              
   mKIAA4202   204 ----FVKALGLDTGQQQDAQEFSKLFMSLLEDTLSK-------------- 235  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx                     
                   pdkaaeawknhslrneslitdlFqGqles.....................
                             ++    +++++ F G++   + +++++++++  ++  + +
   mKIAA4202   236 ---------QKNPDVRNVVQQQFCGEYAYvtvcnqcgresklvskfyele 276  

                RF                                          xxxxxxxxx
                   .........................................rlkisrLPp
                    + +++++ +++ ++  ++++ +++++  +++++++++ ++++++ +LP 
   mKIAA4202   277 lniqghkqltdciseflkeerlegdnryfcencqskqnatrKIRLLSLPC 326  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxx
                   iLiihLKRFkydgetgmnkKindkVefPleLdlssyctae.pplkYeLya
                   +L ++L+RF +d++tg +kK+n  + f + Ld+ +y   ++++ +YeL a
   mKIAA4202   327 TLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHKgGSFVYELSA 376  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx     
                   VvvHsGsslsgGHYiayikkkkknnkWykfDDekVsevseeevle.....
                   V++H G+s+++GHYia++k ++  ++Wykf+De ++ ++  + + + +++
   mKIAA4202   377 VLIHRGVSAYSGHYIAHVK-DPQSGEWYKFNDEDIEKMEGKKLQLgieed 425  

                RF                   xxxxxxxxxx   
                   ..................rsssAYiLFY<-*
                    +++++++++++ +++++ s++AY+L+Y   
   mKIAA4202   426 lepsksqtrkpkcgkgthCSRNAYMLVY    453  

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