hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mie/mie24089/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4200  ( 414 res)   mie24089

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEP      Domain found in Dishevelled, Egl-10, and Ple   156.8    2.2e-42   2
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      37.3      2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEP        1/2      50   124 ..     1    90 []    85.0  8.9e-21
DEP        2/2     151   224 ..     1    90 []    73.2  3.1e-17
PDZ        1/1     343   412 ..     1    80 []    37.3    2e-06

Alignments of top-scoring domains:
DEP: domain 1 of 2, from 50 to 124: score 85.0, E = 8.9e-21
                   *->pesglklddrkyflktypncFtGselVdWLldnlegqsnngptkttf
                      +e  +++d r+++lktypncF+ +el+dWL+++ e            
   mKIAA4200    50    HEEKVIKD-RRHHLKTYPNCFVAKELIDWLIEHKE------------ 83   

                   iidreeAvhlgqaLlkeGlihhvndpnkhtFkdsknalYrFtd<-*
                    +dre A++l+q+L++ G ihhv  +  + Fkd  + +YrF++   
   mKIAA4200    84 ASDRETAIKLMQKLADRGIIHHVC-DEHKEFKDV-KLFYRFRK    124  

DEP: domain 2 of 2, from 151 to 224: score 73.2, E = 3.1e-17
                   *->pesglklddrkyflktypncFtGselVdWLldnlegqsnngptkttf
                      pe++l  + r++ + +y+ +F+ se+ dWL++ +e            
   mKIAA4200   151    PETTLLQP-REEEGVKYERTFMASEFLDWLVQEGE------------ 184  

                   iidreeAvhlgqaLlkeGlihhvndpnkhtFkdsknalYrFtd<-*
                     +r+eA+ l+ +L+++G i+hv+  nkh+F ds n lY+F+    
   mKIAA4200   185 ATTRKEAEQLCHRLMDHGIIQHVS--NKHPFVDS-NLLYQFRM    224  

PDZ: domain 1 of 1, from 343 to 412: score 37.3, E = 2e-06
                   *->gglGfsivg..gifvssvvpGspAakaGrkslglLkvGDvIleVNGe
                       g+Gf ++g++++ +  v p +pAa aG      +kv   +++VNG 
   mKIAA4200   343    VGWGFVVRGskPCHIQAVDPSGPAAAAG------MKVCQFVVSVNG- 382  

                   tsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    +v ++++  + +l+   ++     +++++v  +    
   mKIAA4200   383 LNVLNVDYRTVSNLILTGPR-----TIVMEVMEEL    412  

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