hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj24036/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4199  ( 510 res)   mfj24036

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IBR      IBR domain                                      93.7    3.7e-24   2
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)            8.9       0.12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1     156   208 ..     1    50 []     8.9     0.12
IBR        1/2     225   287 ..     1    72 []   102.4  8.8e-27
IBR        2/2     299   357 ..     1    72 []    -0.6     0.14

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 156 to 208: score 8.9, E = 0.12
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss......
                      C++C++    ++   +l l C H      fCrsC e++ s   +++ 
   mKIAA4199   156    CAVCMQFVRKEN---LLSLACQHQ-----FCRSCWEQHCSVlvkdgv 194  

                   .....sgnttCplC<-*
                   + + +++ + Cpl    
   mKIAA4199   195 gvgisCMAQDCPLR    208  

IBR: domain 1 of 2, from 225 to 287: score 102.4, E = 8.8e-27
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      +KY+r+l+++yves+ +l  CP++dC++++rv+        ep +rr
   mKIAA4199   225    DKYRRYLFRDYVESHFQLQLCPGADCPMVIRVQ--------EPRARR 263  

                   veCskGCgfeFCfnCkeewHgplsC<-*
                   v+C++ C ++FCf+C++++H+p++C   
   mKIAA4199   264 VQCNR-CSEVFCFKCRQMYHAPTDC    287  

IBR: domain 2 of 2, from 299 to 357: score -0.6, E = 0.14
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                         ++ ++++y++++   k CP   C  ++ ++          +++ 
   mKIAA4199   299    ---DDSETANYISAH--TKDCPK--CNICIEKN---------GGCNH 329  

                   veCskGCgfeFCfnCkeew..Hgpl..sC<-*
                    +Csk C + FC+ C+ +w++Hg     C   
   mKIAA4199   330 MQCSK-CKHDFCWMCLGDWktHGSEyyEC    357  

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