hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00049/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4196  ( 437 res)   mfj00049

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    314.1    9.7e-90  15

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/15     18    40 ..     1    23 []    23.5     0.03
ZnF_C2H2   2/15     46    68 ..     1    23 []    28.7  0.00078
ZnF_C2H2   3/15     74    96 ..     1    23 []    31.2  0.00014
ZnF_C2H2   4/15    102   124 ..     1    23 []    19.3     0.53
ZnF_C2H2   5/15    130   152 ..     1    23 []    30.7   0.0002
ZnF_C2H2   6/15    158   180 ..     1    23 []    30.3  0.00027
ZnF_C2H2   7/15    186   208 ..     1    23 []    28.2   0.0011
ZnF_C2H2   8/15    214   236 ..     1    23 []    28.4    0.001
ZnF_C2H2   9/15    242   264 ..     1    23 []    28.8  0.00077
ZnF_C2H2  10/15    270   292 ..     1    23 []    28.2   0.0012
ZnF_C2H2  11/15    298   320 ..     1    23 []    28.7  0.00078
ZnF_C2H2  12/15    326   348 ..     1    23 []    24.9    0.011
ZnF_C2H2  13/15    354   376 ..     1    23 []    29.0  0.00064
ZnF_C2H2  14/15    382   404 ..     1    23 []    29.5  0.00047
ZnF_C2H2  15/15    410   432 ..     1    23 []     3.0  1.4e+02

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 15, from 18 to 40: score 23.5, E = 0.03
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C ++f++ + Lk H r+H   
   mKIAA4196    18    FRCKV-CARTFRNSsCLKTHFRIH    40   

ZnF_C2H2: domain 2 of 15, from 46 to 68: score 28.7, E = 0.00078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f+ ++ L++H+ +H   
   mKIAA4196    46    YKCNY-CGKAFTARsGLTKHVLIH    68   

ZnF_C2H2: domain 3 of 15, from 74 to 96: score 31.2, E = 0.00014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ + L++H+r+H   
   mKIAA4196    74    YECKE-CGKAFSTSsGLVEHIRIH    96   

ZnF_C2H2: domain 4 of 15, from 102 to 124: score 19.3, E = 0.53
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgk   + ++L+ H+r+H   
   mKIAA4196   102    FECYQ-CGKALAHSsSLVGHLRTH    124  

ZnF_C2H2: domain 5 of 15, from 130 to 152: score 30.7, E = 0.0002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+k+f++ + L+ Hmr+H   
   mKIAA4196   130    FECNQ-CDKTFTRSsYLRIHMRTH    152  

ZnF_C2H2: domain 6 of 15, from 158 to 180: score 30.3, E = 0.00027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f+ ++ L++H+r+H   
   mKIAA4196   158    YECKE-CGKTFPERsCLTKHIRTH    180  

ZnF_C2H2: domain 7 of 15, from 186 to 208: score 28.2, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f s  +L+ H+++H   
   mKIAA4196   186    YECKE-CGKGFISFaQLTVHIKTH    208  

ZnF_C2H2: domain 8 of 15, from 214 to 236: score 28.4, E = 0.001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C ksf++ ++L+ H r+H   
   mKIAA4196   214    FQCKV-CTKSFRNSsSLETHFRIH    236  

ZnF_C2H2: domain 9 of 15, from 242 to 264: score 28.8, E = 0.00077
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f+ ++ L+ H+r H   
   mKIAA4196   242    YKCSY-CGKAFTARsGLTIHLRNH    264  

ZnF_C2H2: domain 10 of 15, from 270 to 292: score 28.2, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk fs+ + L+ H+r+H   
   mKIAA4196   270    YACQE-CGKAFSTSsGLIAHIRSH    292  

	[output cut off at A = 10 top alignments]
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