hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj00049/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4196 ( 437 res) mfj00049 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 369.8 2.8e-107 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/14 18 40 .. 1 24 [] 24.2 0.0031 zf-C2H2 2/14 46 68 .. 1 24 [] 33.3 5.5e-06 zf-C2H2 3/14 74 96 .. 1 24 [] 37.0 4.2e-07 zf-C2H2 4/14 102 124 .. 1 24 [] 27.1 0.0004 zf-C2H2 5/14 130 152 .. 1 24 [] 38.6 1.4e-07 zf-C2H2 6/14 158 180 .. 1 24 [] 34.6 2.3e-06 zf-C2H2 7/14 186 208 .. 1 24 [] 31.4 2e-05 zf-C2H2 8/14 214 236 .. 1 24 [] 31.4 2e-05 zf-C2H2 9/14 242 264 .. 1 24 [] 33.8 4e-06 zf-C2H2 10/14 270 292 .. 1 24 [] 36.6 5.7e-07 zf-C2H2 11/14 298 320 .. 1 24 [] 34.7 2.1e-06 zf-C2H2 12/14 326 348 .. 1 24 [] 25.5 0.0013 zf-C2H2 13/14 354 376 .. 1 24 [] 27.7 0.00027 zf-C2H2 14/14 382 404 .. 1 24 [] 34.8 2e-06 Alignments of top-scoring domains: zf-C2H2: domain 1 of 14, from 18 to 40: score 24.2, E = 0.0031 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C ++F+++s Lk+H r+H mKIAA4196 18 FRCK-VCARTFRNSSCLKTHFRIH 40 zf-C2H2: domain 2 of 14, from 46 to 68: score 33.3, E = 5.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s L++H +H mKIAA4196 46 YKCN-YCGKAFTARSGLTKHVLIH 68 zf-C2H2: domain 3 of 14, from 74 to 96: score 37.0, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L H+r+H mKIAA4196 74 YECK-ECGKAFSTSSGLVEHIRIH 96 zf-C2H2: domain 4 of 14, from 102 to 124: score 27.1, E = 0.0004 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+ ++s+L HlrtH mKIAA4196 102 FECY-QCGKALAHSSSLVGHLRTH 124 zf-C2H2: domain 5 of 14, from 130 to 152: score 38.6, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+r+s L+ H+rtH mKIAA4196 130 FECN-QCDKTFTRSSYLRIHMRTH 152 zf-C2H2: domain 6 of 14, from 158 to 180: score 34.6, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s L++H+rtH mKIAA4196 158 YECK-ECGKTFPERSCLTKHIRTH 180 zf-C2H2: domain 7 of 14, from 186 to 208: score 31.4, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + ++L+ H++tH mKIAA4196 186 YECK-ECGKGFISFAQLTVHIKTH 208 zf-C2H2: domain 8 of 14, from 214 to 236: score 31.4, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C ksF+++s+L++H r+H mKIAA4196 214 FQCK-VCTKSFRNSSSLETHFRIH 236 zf-C2H2: domain 9 of 14, from 242 to 264: score 33.8, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s L+ Hlr H mKIAA4196 242 YKCS-YCGKAFTARSGLTIHLRNH 264 zf-C2H2: domain 10 of 14, from 270 to 292: score 36.6, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs++s L +H+r+H mKIAA4196 270 YACQ-ECGKAFSTSSGLIAHIRSH 292 zf-C2H2: domain 11 of 14, from 298 to 320: score 34.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ++s L+ Hl++H mKIAA4196 298 FECD-HCGKAFASSSYLNVHLKIH 320 zf-C2H2: domain 12 of 14, from 326 to 348: score 25.5, E = 0.0013 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+ +s L H+rtH mKIAA4196 326 FQCT-VCGKTFTCSSYLPVHMRTH 348 zf-C2H2: domain 13 of 14, from 354 to 376: score 27.7, E = 0.00027 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksF +s L+ H+r+H mKIAA4196 354 FQCI-ICGKSFLWSSYLRVHMRIH 376 zf-C2H2: domain 14 of 14, from 382 to 404: score 34.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s L++Hlr+H mKIAA4196 382 YVCQ-YCGKAFTEHSGLNKHLRKH 404 //