hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12940/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4194  ( 320 res)   mbg12940

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     184.1    1.4e-50   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2      56   158 ..     1    92 []    87.8  1.3e-21
C2         2/2     187   301 ..     1    92 []    96.4  3.3e-24

Alignments of top-scoring domains:
C2: domain 1 of 2, from 56 to 158: score 87.8, E = 1.3e-21
                   *->tLtvkiisArnLp........DPYVkvs.........kTkvvkktls
                      +Ltv +++A  Lp  + ++++DPYVkv+  ++++++  Tkv++ktl 
   mKIAA4194    56    QLTVGVLQAAELPaldmggtsDPYVKVFllpdkkkkyETKVHRKTL- 101  

                   gfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvtipp
                     NP +nE   tF+F+vp ++ ++++L+  +yD+++ +++d+iG+v +p 
   mKIAA4194   102 --NPAFNE---TFTFKVPYqelggKtLVMAIYDFdrfskhDIIGEVKVP- 145  

                   nnahqhsadglihlsell.ggrh.kl<-*
                                +++++ g++ +++   
   mKIAA4194   146 -------------MNTVDlGQPIeEW    158  

C2: domain 2 of 2, from 187 to 301: score 96.4, E = 3.3e-24
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      +Ltv i++A+nL++ + ++ +DPYVk++  +++++ +++kT v+kkt
   mKIAA4194   187    KLTVCILEAKNLKkmdvgglsDPYVKIHlmqngkrlkkkKTTVKKKT 233  

                   lsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvti
                   l   NP++nE   +F Fe+p ++ ++ +++++V D+++ ++++ iG++ +
   mKIAA4194   234 L---NPYFNE---SFSFEIPFeqiqkVqVVVTVLDYdklgknEAIGKIFV 277  

                   ppnnahqhsadg..lihlsell.ggrh.kl<-*
                   +      ++a+g++l+h+s++l ++r++     
   mKIAA4194   278 G------SNATGteLRHWSDMLaNPRRpIA    301  

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